User: rah
rah • 20
- Reputation:
- 20
- Status:
- New User
- Location:
- Last seen:
- 1 day, 8 hours ago
- Joined:
- 9 months, 2 weeks ago
- Email:
- r**@hotmail.dk
Posts by rah
<prev
• 14 results •
page 1 of 2 •
next >
0
votes
1
answer
131
views
1
answer
... Hi All,
I'm currently working with a bunch of bed files containing specific regions of the human genome.
I wish to annotate the regions with genes, and especially genes related to man. However, to do this, I need a bedfile with the coordinates for each gene and a proper naming for that gene in or ...
1
vote
0
answers
217
views
0
answers
... Now i've seen in several post here at Biostars, that if we have mapping qualities of 0, this means the reads are multimapping.
The data im analyzing comes from Oxford Nanopore sequencing which in general have a higher sequencing error, when compared to other sequencing tools.
So my question woul ...
0
votes
0
answers
388
views
0
answers
... Thank you, ill give it a look ...
written 7 months ago by
rah • 20
0
votes
0
answers
388
views
0
answers
... Thanks for suggesting to cut the reads into smaller pieces, because one of my problems has exactly been im having long reads. ...
written 7 months ago by
rah • 20
1
vote
0
answers
388
views
0
answers
... Hi everyone,
Im analysing Oxford Nanopore sequenced DNA in human cells, which i align to the hg19 UCSC reference genome. Most of the time i get a high mapping percentage, however in a few cases i get mapping percentages below 5%.
Of course im able to tune the parameteres of minimap2 a bit, but i ...
written 7 months ago by
rah • 20
0
votes
0
answers
272
views
0
answers
... It looks really useful. Thanks! ...
written 8 months ago by
rah • 20
0
votes
0
answers
272
views
0
answers
... Thanks for your suggestions for both options. ...
written 8 months ago by
rah • 20
0
votes
0
answers
272
views
0
answers
... Because i didn't think of that, all of the examples i could find handling fasta headers was using grep, so i thought i might as well stay with using grep. well that worked perfectly, thanks ...
written 8 months ago by
rah • 20
1
vote
0
answers
272
views
0
answers
... I'm looking for a way to create an text file containing some information about sequence reads, extracted from a .fasta file. Either by using grep, sed or awk.
Basically i have several fasta sequences which i have trimmed, so i an example of a header for a trimmed fasta file with a sequence where i ...
written 8 months ago by
rah • 20
0
votes
1
answer
329
views
1
answers
... Thanks for your respons, i'll give it a try when im doing my next round of analysis. ...
written 8 months ago by
rah • 20
Latest awards to rah
No awards yet. Soon to come :-)
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1874 users visited in the last hour