User: rah

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rah10
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Posts by rah

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Comment: C: Bash: For loop with two statements, first statements as input to second with .fa
... Thanks for your respons, i'll give it a try when im doing my next round of analysis. ...
written 9 hours ago by rah10
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Comment: C: Bash: For loop with two statements, first statements as input to second with .fa
... Thank you, nicely noticed. ...
written 9 hours ago by rah10
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Bash: selecting directory and fasta files from assembly
... I'm doing de novo assembling of several .fasta files using the Unicycler tool, and i want to handle the output directories of the assembly as well as the original .fasta file. When the assembling finishes it creates a directory for each assembly, and i'm naming it similarly to the name of the origi ...
assembly .fasta unix bash written 9 hours ago by rah10
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Bash: For loop with two statements, first statements as input to second with .fasta files
... im working on several .fasta files which in their name contains the chr_start_end.fasta which i want to iterate through and then extract the individual size for each fasta file. Then i want to use the size as an input to another command for each fasta file, so in the same for loop. To extract the c ...
sequence for-loop bash .fasta assembly written 17 hours ago by rah10
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Dotplots and weight matrices for quality assessment
... Im doing different analysis using dotplots in a project. 1) First im comparing a sequence read (in fastQ format) to a reference genome, in order to identify some genomic regions where the read aligns, in order to identify some unique and repetitive regions. 2) Then im suppose to calculate the qual ...
pswm dotplot weight matrix pwm pssm written 14 days ago by rah10 • updated 9 days ago by Biostar ♦♦ 20

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