User: rah
rah • 20
- Reputation:
- 20
- Status:
- New User
- Location:
- Last seen:
- 13 hours ago
- Joined:
- 5 months, 2 weeks ago
- Email:
- r**@hotmail.dk
Posts by rah
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... Thank you, ill give it a look ...
written 3 months ago by
rah • 20
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... Thanks for suggesting to cut the reads into smaller pieces, because one of my problems has exactly been im having long reads. ...
written 3 months ago by
rah • 20
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... Hi everyone,
Im analysing Oxford Nanopore sequenced DNA in human cells, which i align to the hg19 UCSC reference genome. Most of the time i get a high mapping percentage, however in a few cases i get mapping percentages below 5%.
Of course im able to tune the parameteres of minimap2 a bit, but i ...
written 3 months ago by
rah • 20
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... It looks really useful. Thanks! ...
written 4 months ago by
rah • 20
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... Thanks for your suggestions for both options. ...
written 4 months ago by
rah • 20
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... Because i didn't think of that, all of the examples i could find handling fasta headers was using grep, so i thought i might as well stay with using grep. well that worked perfectly, thanks ...
written 4 months ago by
rah • 20
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... I'm looking for a way to create an text file containing some information about sequence reads, extracted from a .fasta file. Either by using grep, sed or awk.
Basically i have several fasta sequences which i have trimmed, so i an example of a header for a trimmed fasta file with a sequence where i ...
written 4 months ago by
rah • 20
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... Thanks for your respons, i'll give it a try when im doing my next round of analysis. ...
written 4 months ago by
rah • 20
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... Thank you, nicely noticed. ...
written 4 months ago by
rah • 20
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... I'm doing de novo assembling of several .fasta files using the Unicycler tool, and i want to handle the output directories of the assembly as well as the original .fasta file.
When the assembling finishes it creates a directory for each assembly, and i'm naming it similarly to the name of the origi ...
written 4 months ago by
rah • 20
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