User: patrick_freeman

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Posts by patrick_freeman

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Comment: A: Obiconvert produces empty EcoPCR database...why?
... Same thing is happening to me after applying obiaddtaxids using an NCBI taxdump. Did you ever get resolution on this? ...
written 4 weeks ago by patrick_freeman0
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Answer: A: ecoTag hanging when assigning taxonomy in Obitools?
... Yes! It turned out that some of my sequence records were empty and that was causing the issues. You can remove empty sequences using this command: obigrep --lmin=1 ...
written 5 weeks ago by patrick_freeman0
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ecoTag hanging when assigning taxonomy in Obitools?
... Hi there, I am currently trying to build a trnL reference library from the EMBL Release 130 for a plant metabarcoding project. I have been trying to follow the tutorial outlined on the Obitools webpage but I've been running into several issues. One issue I'm having is with the taxonomy assignmen ...
next-gen sequencing written 7 weeks ago by patrick_freeman0 • updated 4 weeks ago by tania.valdiviac0

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