User: slg.manti

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slg.manti0
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Posts by slg.manti

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Error in KeggList command
... I am getting this error when I am trying to get mice genes using KEGGLIST command (KEGGREST package) > mice_genes=keggList("mmu") #to fetch mice genes Error in curl::curl_fetch_memory(url, handle = handle) : Timeout was reached: Connection timed out after 10000 milliseconds ...
R keggrest written 6 months ago by slg.manti0 • updated 6 months ago by RamRS23k
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Comment: C: #String operation#protein-protein interaction #R platform
... Thanks, I has worked out. ...
written 6 months ago by slg.manti0
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Comment: C: #String operation#protein-protein interaction #R platform
... Thanks, it is working ...
written 6 months ago by slg.manti0
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#String operation#protein-protein interaction #R platform
... I want to create an excel file where there are three columns proteinA pp protein B I have acquired the word file as follow from biogrid: "ETG18033 ETG19698 Nfkb1 Relb NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105 shep Two-hybrid Ravasi T (2010) 20211142 10090 10090" I want to process t ...
gene R assembly protein-protein interaction written 6 months ago by slg.manti0 • updated 6 months ago by RamRS23k
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Comment: C: Pathway enrichment and analysis of mice gene sets in R platform
... I got the custom genesets and custom pathways mice specific using KEGGREST package. I also need Protein-protein interaction network path mice specific. Is there any package for that? ...
written 6 months ago by slg.manti0
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Comment: C: Pathway enrichment and analysis of mice gene sets in R platform
... I tried pathfindR . But it is not working due to default Human setup. ...
written 6 months ago by slg.manti0
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Pathway enrichment and analysis of mice gene sets in R platform
... I am working on RNA-Seq data of mice samples. Is there a R package for pathway(KEGG,Biocarta) enrichment and analysis for mice specific genesets? ...
mice rna-seq pathway enrichment written 6 months ago by slg.manti0 • updated 6 months ago by caggtaagtat700

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