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0
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738
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constructing a reference matrix from affy 2.0 chip for a 4.0 chip.
affy miRNA Affymetrix Multispecies miRNA-1 Array
4.7 years ago by RNAseqer ▴ 280
1
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0
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2.3k
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Comment: C: affy Transcriptome Analysis Console (TAC), export expression matrix?
4.7 years ago by RNAseqer ▴ 280
3
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2
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2.3k
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affy Transcriptome Analysis Console (TAC), export expression matrix?
affy TAC expression matrix
4.7 years ago by RNAseqer ▴ 280
1
vote
2
replies
836
views
Small number of genes, drop in sft fit curve at higher threshold powers. why?
sft wgcna scale-free
updated 4.8 years ago by 88k • written 4.8 years ago by ▴ 280
0
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0
replies
1.3k
views
Comment: C: Excel: using quartiles & averageifs to combine probe values without outliers
4.9 years ago by RNAseqer ▴ 280
2
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1
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1.3k
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Answer: C: Excel: using quartiles & averageifs to combine probe values without outliers
4.9 years ago by RNAseqer ▴ 280
3
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3
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1.3k
views
Excel: using quartiles & averageifs to combine probe values without outliers
excel outliers quartile averageifs matching
updated 4.9 years ago by 14k • written 4.9 years ago by ▴ 280
1
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0
replies
1.8k
views
Comment: C: A good place to get immune cell deconvolution reference datasets?
5.0 years ago by RNAseqer ▴ 280
0
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0
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1.8k
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Comment: C: A good place to get immune cell deconvolution reference datasets?
5.0 years ago by RNAseqer ▴ 280
4
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4
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1.8k
views
A good place to get immune cell deconvolution reference datasets?
deconvolution reference datasets
updated 5.0 years ago by ★ 18k • written 5.0 years ago by ▴ 280
3
votes
3
replies
1.8k
views
Correlating WGCNA modules to Diseased/Not-Diseased Trait
WGCNA Modules Traits
updated 5.4 years ago by 3.8k • written 5.4 years ago by ▴ 280
0
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1
reply
1.1k
views
extracting a subset of probes from an expression object
subset probes microarray exprs
updated 5.5 years ago by 20 • written 5.7 years ago by ▴ 280
1
vote
1
reply
5.8k
views
how to adjust for continuous covariates in limma?
limma continuous covariates DE
updated 5.5 years ago by 21k • written 5.5 years ago by ▴ 280
0
votes
0
replies
649
views
summarized probes with expresso. how do i get transcript IDs?
affy expresso transcript ID
5.6 years ago by RNAseqer ▴ 280
0
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0
replies
988
views
is there an function to summarize miRNA array probes but do nothing else?
summarise probes affy miRNA
5.6 years ago by RNAseqer ▴ 280
0
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0
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2.5k
views
Comment: C: changing feature names (row names) for expressionset object?
5.7 years ago by RNAseqer ▴ 280
0
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0
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2.5k
views
Comment: C: changing feature names (row names) for expressionset object?
5.7 years ago by RNAseqer ▴ 280
2
votes
5
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2.5k
views
changing feature names (row names) for expressionset object?
expressionset limma rownames
5.7 years ago by RNAseqer ▴ 280
0
votes
0
replies
953
views
whats is the best normalization technique for miRNA microarray data?
normalization miRNA microarray
5.7 years ago by RNAseqer ▴ 280
0
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0
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6.4k
views
Comment: C: How to in R: Include principal components as covariates in analysis
5.7 years ago by RNAseqer ▴ 280
0
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1
reply
3.3k
views
Comment: C: pData function not found. substitute? "An end to end workflow for differential g
5.7 years ago by RNAseqer ▴ 280
6
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4
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3.3k
views
pData function not found. substitute? "An end to end workflow for differential gene expression using Affymetrix microarrays"
pvca bioconductor sva pData R
updated 5.7 years ago by 12k • written 5.7 years ago by ▴ 280
0
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0
replies
1.8k
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making limma design matrix with covariates, a strange labelling issue?
limma design matrix labels columns
5.7 years ago by RNAseqer ▴ 280
0
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1
reply
6.4k
views
Comment: C: How to in R: Include principal components as covariates in analysis
5.7 years ago by RNAseqer ▴ 280
1
vote
5
replies
6.4k
views
How to in R: Include principal components as covariates in analysis
pca covariates principal components
updated 5.7 years ago by 88k • written 5.7 years ago by ▴ 280
3
votes
1
reply
769
views
batchCombat package for R?
batchCombat R
updated 5.7 years ago by 86k • written 5.7 years ago by ▴ 280
3
votes
3
replies
2.9k
views
Principal component analysis of SVA's surrogate variables
sva stdev surrogate variables
updated 5.7 years ago by 12k • written 5.7 years ago by ▴ 280
0
votes
0
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2.9k
views
Comment: C: Principal component analysis of SVA's surrogate variables
5.7 years ago by RNAseqer ▴ 280
0
votes
1
reply
1.8k
views
contrast matrix design question, limma-sva
contrast matrix sva limma
5.7 years ago by RNAseqer ▴ 280
0
votes
0
replies
1.2k
views
sva pprob.b all 0s?
sva microarray r pprob.b
5.7 years ago by RNAseqer ▴ 280
1
vote
0
replies
16k
views
Comment: C: Setting a threshold for FDR correction
5.7 years ago by RNAseqer ▴ 280
0
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1
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5.1k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
updated 5.7 years ago by 35k • written 5.7 years ago by ▴ 280
1
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0
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5.1k
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Comment: C: No significant DEG: A request to double check my commands for limma.
5.7 years ago by RNAseqer ▴ 280
0
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0
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5.1k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
5.7 years ago by RNAseqer ▴ 280
0
votes
0
replies
5.1k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
5.7 years ago by RNAseqer ▴ 280
0
votes
1
reply
5.1k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
5.7 years ago by RNAseqer ▴ 280
0
votes
1
reply
5.1k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
5.7 years ago by RNAseqer ▴ 280
0
votes
1
reply
5.1k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
5.7 years ago by RNAseqer ▴ 280
0
votes
2
replies
5.1k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
5.7 years ago by RNAseqer ▴ 280
0
votes
0
replies
5.1k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
5.7 years ago by RNAseqer ▴ 280
0
votes
2
replies
5.1k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
5.7 years ago by RNAseqer ▴ 280
0
votes
1
reply
5.1k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
5.7 years ago by RNAseqer ▴ 280
11
votes
22
replies
5.1k
views
No significant DEG: A request to double check my commands for limma.
limma differential-gene-expression
updated 9 months ago by 44k • written 5.7 years ago by ▴ 280
1
vote
0
replies
8.1k
views
Comment: C: how do you remove the trace in heatmap.2 in R?
5.7 years ago by RNAseqer ▴ 280
7
votes
3
replies
8.1k
views
how do you remove the trace in heatmap.2 in R?
heatmap.2 r microarray heat map
updated 5.7 years ago by 88k • written 5.7 years ago by ▴ 280
1
vote
0
replies
1.5k
views
Comment: C: limma, best practices review paper?
5.7 years ago by RNAseqer ▴ 280
2
votes
2
replies
1.5k
views
limma, best practices review paper?
R limma microarray
updated 5.7 years ago by 88k • written 5.7 years ago by ▴ 280
1
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0
replies
10.0k
views
Comment: C: pulling snps from vcf file using ids
5.8 years ago by RNAseqer ▴ 280
0
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0
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2.6k
views
Comment: C: No Sensitivity/Accuracy output from gffcompare, what am I doing wrong?
5.8 years ago by RNAseqer ▴ 280
0
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0
replies
1.1k
views
Comment: C: minimum snp number from set in LD
5.8 years ago by RNAseqer ▴ 280
130 results • Page 2 of 3
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