User: bagi.m

gravatar for bagi.m
bagi.m10
Reputation:
10
Status:
New User
Location:
Last seen:
1 week, 1 day ago
Joined:
1 week, 3 days ago
Email:
b*****@seznam.cz

Posts by bagi.m

<prev • 3 results • page 1 of 1 • next >
0
votes
2
answers
97
views
2
answers
Comment: C: Why is eXpress producing strangely low counts?
... Thank you for your answer. I am indeed planing to try Salmon with this data, and see if I get to similar conclusion. I found some articles / posts claiming pseudoalignment tools are better, but both were based on human data. So I don't know if this claim holds for organisms with much higher intrasp ...
written 8 days ago by bagi.m10
2
votes
2
answers
97
views
2
answers
Answer: A: Why is eXpress producing strangely low counts?
... Ok, this one is embarrassing. I completely misunderstood the eXpress documentation regarding sorting the input .bam file and the fact that you are _not_ supposed to sort it. ...
written 8 days ago by bagi.m10
4
votes
2
answers
97
views
2
answers
Why is eXpress producing strangely low counts?
... I have aligned our RNA-seq to reference transcriptome (there is no genome) using bwa mem. The reference transcriptome is from the same species but from different population, so some mismatches and indels are expected. Then I used eXpress to count reads. The results are strangely low. No reference ...
rna-seq written 9 days ago by bagi.m10

Latest awards to bagi.m

Scholar 8 days ago, created an answer that has been accepted. For A: Why is eXpress producing strangely low counts?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 644 users visited in the last hour