User: Ting

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Ting0
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Posts by Ting

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Answer: A: fastq-mcf Error: Error during file close, possible partial write, failing
... I found that it's the low I/O performance of the azure virtual machine caused the problem, not the software itself. It's solved by moving the input files from blob storage to a mounted disk. I've also tried some current trimming tools. "[fastp][1]" seems a good choice. [1]: https://github.com/O ...
written 8 days ago by Ting0
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Comment: C: fastq-mcf Error: Error during file close, possible partial write, failing
... Thank you for your advice, @genomax. I found that the problem is not due to the software itself. Thank you anyway. ...
written 8 days ago by Ting0
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fastq-mcf Error: Error during file close, possible partial write, failing
... Hi, I’m using fastq-mcf to remove adapter sequences from RNAseq data. fastq-mcf -o ctrl_clean_1.fastq -o ctrl_clean_2.fastq -l 50 -q 15 -t 0.1 -C 1000000 adaptor.fasta ctrl_1.fastq ctrl_2.fastq After 4-5 hours running, it came with this error message: Error during file close, possible p ...
software error adapter trimming rna-seq fastq-mcf written 11 days ago by Ting0

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