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Showing :
questions
1
vote
2
replies
1.2k
views
Absolute segmentation file result
sequencing
alignment
genome
written 4.8 years ago by
9521ljh
▴ 50
1
vote
2
replies
1.1k
views
question about translocation of SV caller output
sequencing
genome
updated 20 months ago by
Getting there
▴ 120 • written 4.7 years ago by
9521ljh
▴ 50
3
votes
1
reply
779
views
is there any other value for evaluating Sequence Mapping??
sequencing
alignment
assembly
Assembly
updated 3.5 years ago by
Biostar
20 • written 5.0 years ago by
9521ljh
▴ 50
0
votes
1
reply
630
views
why snp class classified into 6 class?
snp
3.5 years ago by
9521ljh
▴ 50
0
votes
2
replies
497
views
allele specific mutation ?
sequencing
next-gen
3.6 years ago by
9521ljh
▴ 50
0
votes
1
reply
820
views
Variant allele frequency with copy number
sequencing
SNP
3.7 years ago by
9521ljh
▴ 50
0
votes
0
replies
520
views
Annovar annotation with specific ENST region ( retain_intron exon)
RNA-Seq
next-gen
3.9 years ago by
9521ljh
▴ 50
2
votes
2
replies
624
views
Methylation normalization between samples from different platform
gene
updated 4.0 years ago by
ATpoint
82k • written 4.0 years ago by
9521ljh
▴ 50
4
votes
1
reply
676
views
Methylation analysis if no normal control
rna-seq
4.0 years ago by
9521ljh
▴ 50
0
votes
1
reply
721
views
Cell line RNA differentially expression gene
RNA-Seq
updated 4.0 years ago by
Kevin Blighe
87k • written 4.0 years ago by
9521ljh
▴ 50
0
votes
0
replies
1.1k
views
RNA log2 fold change in FPKM
RNA-Seq
4.1 years ago by
9521ljh
▴ 50
0
votes
5
replies
796
views
How to do if no normal control for RNA
next-gen
RNA-Seq
updated 4.2 years ago by
i.sudbery
19k • written 4.2 years ago by
9521ljh
▴ 50
0
votes
2
replies
871
views
Comparing RNA expression between different tissue type, but same Cancer.
RNA-Seq
updated 4.2 years ago by
i.sudbery
19k • written 4.2 years ago by
9521ljh
▴ 50
3
votes
1
reply
2.5k
views
GeneHancer Database download link
sequencing
next-gen
updated 4.2 years ago by
Biostar
20 • written 4.2 years ago by
9521ljh
▴ 50
0
votes
2
replies
1.2k
views
RNA-seq batch effect remove
RNA-Seq
sequencing
updated 4.2 years ago by
Biostar
20 • written 4.3 years ago by
9521ljh
▴ 50
0
votes
1
reply
680
views
whole genome sequencing analysis for one sample
genome
rna-seq
updated 4.2 years ago by
Fatima
▴ 1000 • written 4.2 years ago by
9521ljh
▴ 50
4
votes
3
replies
1.3k
views
Circos plot tool
next-gen
sequence
R
updated 4.2 years ago by
Biostar
20 • written 4.3 years ago by
9521ljh
▴ 50
0
votes
1
reply
486
views
DAVID multiple input
gene
next-gen
sequencing
4.3 years ago by
9521ljh
▴ 50
2
votes
3
replies
798
views
Predict function by Mutation?
SNP
gene
sequencing
next-gen
updated 4.3 years ago by
Kevin Blighe
87k • written 4.3 years ago by
9521ljh
▴ 50
0
votes
2
replies
1.1k
views
Fusion orientation make sense or not
sequencing
sequence
next-gen
gene
updated 4.4 years ago by
hellosearchorg
• 0 • written 4.4 years ago by
9521ljh
▴ 50
3
votes
2
replies
1.2k
views
mRNA, ceRNA, miRNA network database
rna-seq
R
next-gen
updated 4.4 years ago by
i.sudbery
19k • written 4.4 years ago by
9521ljh
▴ 50
6
votes
4
replies
807
views
is there any database that show RNA false positive?
RNA-Seq
next-gen
sequencing
updated 4.5 years ago by
Kristoffer Vitting-Seerup
★ 4.0k • written 4.5 years ago by
9521ljh
▴ 50
0
votes
2
replies
2.0k
views
extract discordant,split reads from BAM file
next-gen
sequencing
sequence
updated 4.5 years ago by
h.mon
35k • written 4.5 years ago by
9521ljh
▴ 50
4
votes
1
reply
662
views
How to know does DNA variant sequencing (eg. somatic variant) affect to Protein structure?
RNA-Seq
rna-seq
sequence
sequencing
next-gen
updated 4.5 years ago by
V
▴ 380 • written 4.5 years ago by
9521ljh
▴ 50
1
vote
1
reply
708
views
why telomere position do not have any reference ?
next-gen
sequencing
alignment
updated 4.5 years ago by
Biostar
20 • written 4.7 years ago by
9521ljh
▴ 50
4
votes
1
reply
709
views
RNA and DNA variant difference
next-gen
rna-seq
genome
sequencing
4.5 years ago by
9521ljh
▴ 50
0
votes
3
replies
1.6k
views
How to check exon count of gene?
sequence
sequencing
next-gen
updated 4.6 years ago by
27atcggcta27
▴ 180 • written 4.6 years ago by
9521ljh
▴ 50
0
votes
1
reply
1.0k
views
Does TCGA rna-seq data include fusion gene expression?
sequencing
RNA-Seq
sequence
next-gen
updated 4.6 years ago by
Kevin Blighe
87k • written 4.6 years ago by
9521ljh
▴ 50
9
votes
4
replies
2.3k
views
hg19 exon, intron, UTR region
sequencing
next-gen
updated 4.6 years ago by
Pierre Lindenbaum
161k • written 4.6 years ago by
9521ljh
▴ 50
5
votes
2
replies
1.1k
views
gene transcription direction
sequencing
genome
gene
updated 4.6 years ago by
Ram
43k • written 4.6 years ago by
9521ljh
▴ 50
3
votes
1
reply
847
views
where to get Gene strand file?
sequence
gene
updated 4.6 years ago by
ATpoint
82k • written 4.6 years ago by
9521ljh
▴ 50
5
votes
5
replies
2.2k
views
where to get Whole Genome Sequencing of Cell line?
genome
sequencing
sequence
updated 4.6 years ago by
Carambakaracho
★ 3.2k • written 4.6 years ago by
9521ljh
▴ 50
3
votes
2
replies
768
views
What is best tool for Cohort data of DNA?
next-gen
sequencing
sequence
gene
updated 4.7 years ago by
manuel.belmadani
★ 1.3k • written 4.7 years ago by
9521ljh
▴ 50
0
votes
4
replies
1.1k
views
Why samtools depth error
sequence
gene
sequencing
4.8 years ago by
9521ljh
▴ 50
0
votes
5
replies
1.4k
views
extract region from the bam file
assembly
sequencing
genome
4.8 years ago by
9521ljh
▴ 50
2
votes
2
replies
710
views
How to mapping DNA read pairs to reference according to particular gene ?
genome
next-gen
sequencing
gene
assembly
4.8 years ago by
9521ljh
▴ 50
0
votes
1
reply
587
views
Varscan parameters(options) value
genome
sequencing
sequence
snp
updated 4.9 years ago by
Biostar
20 • written 5.1 years ago by
9521ljh
▴ 50
0
votes
0
replies
609
views
GATK data-preprocessing omit Indelrealignment step
GATK
Indelrealignment
4.9 years ago by
9521ljh
▴ 50
2
votes
3
replies
1.7k
views
About GATK data-preprocessing workflow
assembly
next-gen
GATK
Preprocessing
uBAM
updated 4.9 years ago by
benformatics
3.9k • written 4.9 years ago by
9521ljh
▴ 50
2
votes
1
reply
2.6k
views
ABSOLUTE output interpretation
ABSOLUTE
purity
ploidy
SCNA
updated 4.9 years ago by
Kevin Blighe
87k • written 5.0 years ago by
9521ljh
▴ 50
10
votes
9
replies
6.4k
views
6 follow
very confused with GC bias
fastqc
updated 5.0 years ago by
chen
★ 2.5k • written 5.0 years ago by
9521ljh
▴ 50
4
votes
2
replies
806
views
is there exist GATK pre-processing(WGS) Script??
genome
alignment
sequencing
sequence
5.0 years ago by
9521ljh
▴ 50
4
votes
2
replies
1.4k
views
Interpretation Fastq file format (paired end)
sequence
sequencing
alignment
updated 5.0 years ago by
Bastien Hervé
5.3k • written 5.0 years ago by
9521ljh
▴ 50
1
vote
1
reply
2.7k
views
How to split Fastq file into Forward, reverse fastq file.
gene
sequencing
sequence
genome
5.0 years ago by
9521ljh
▴ 50
3
votes
1
reply
663
views
NCBI location name
genome
snp
sequence
sequencing
gene
updated 5.0 years ago by
zx8754
11k • written 5.0 years ago by
9521ljh
▴ 50
3
votes
1
reply
597
views
Get rid of Low Quality Bases In A Sequence, and which be replaced on removed place?
rna-seq
snp
sequence
sequencing
updated 5.0 years ago by
WouterDeCoster
47k • written 5.0 years ago by
9521ljh
▴ 50
4
votes
3
replies
1.2k
views
how to extract only exon from copynumber called by Varscan2?
sequence
sequencing
next-gen
SNP
5.0 years ago by
9521ljh
▴ 50
2
votes
4
replies
955
views
what is next step to find the disease?
gene
next-gen
sequencing
sequence
updated 5.0 years ago by
JC
13k • written 5.0 years ago by
9521ljh
▴ 50
0
votes
1
reply
683
views
is it possible gene pathway analysis according to mutation type?
sequencing
alignment
SNP
5.0 years ago by
9521ljh
▴ 50
0
votes
3
replies
2.0k
views
How to extract exon from bam file
SNP
genome
sequencing
sequence
updated 5.0 years ago by
Buffo
★ 2.4k • written 5.0 years ago by
9521ljh
▴ 50
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