User: 9521ljh

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9521ljh40
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Posts by 9521ljh

<prev • 72 results • page 2 of 8 • next >
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How to do if no normal control for RNA
... I have 10 patient Tumor RNA sequence. i have somatic mutation (DNA) list. Then i want to survey whether somatic mutation effect to RNA expression. However, there is no normal control. is there any way to analyze? additionally, i don't have control Methylation(idat)... i am losing way to ana ...
next-gen rna-seq written 11 months ago by 9521ljh40 • updated 11 months ago by i.sudbery10k
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Comment: C: Comparing RNA expression between different tissue type, but same Cancer.
... Sincerely really thank you! ...
written 11 months ago by 9521ljh40
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Comparing RNA expression between different tissue type, but same Cancer.
... i have 40 SARCOMA data. and there are many groups of tissue. if i use RNA expression normalization method, is it okay to compare? More specific, if i have 12 bone tissue sarcoma and 28 Uterus tissue type. using these 40 sample, the edgeR results in MDM4 gene is differentially expression in tumor ...
rna-seq written 11 months ago by 9521ljh40 • updated 11 months ago by i.sudbery10k
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GeneHancer Database download link
... I can not find where to download GeneHancer Database. the alternative download is below link. [oncobase link][1] [1]: http://159.226.67.237/sun/oncobase/welcome/download.html This link is provided by oncobase(another Database) , not GeneHancer. However, i want to download directly to Geneh ...
next-gen sequencing written 11 months ago by 9521ljh40 • updated 11 months ago by Biostar ♦♦ 20
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whole genome sequencing analysis for one sample
... is there any paper for one sample analysis? i want to reference. But i can't find research article that analyze only one sample. ...
genome rna-seq written 12 months ago by 9521ljh40 • updated 12 months ago by Fatima890
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Circos plot tool
... i am looking for R package or tool for plotting Circos. http://circos.ca/images/ This tool is most popular. But it is too hard for me to plot genomic rearrangment and can't find the manual for plot Copy number or genomic rearrangement. please recommend the Tools for plot Circos easily ...
R next-gen sequence written 12 months ago by 9521ljh40 • updated 12 months ago by Biostar ♦♦ 20
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RNA-seq batch effect remove
... i have TCGA RNA seq dataset(sample number: 11) and my own dataset(sample number : 11) i want to compare TCGA and my own dataset expression level. However, i find that my own datasets have lot of read counts(output from RSEM) overall. Thus, i feel need to do remove batch effect within TCGA datas ...
rna-seq sequencing written 12 months ago by 9521ljh40 • updated 11 months ago by Biostar ♦♦ 20
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DAVID multiple input
... i have lots of gene list files. (40 files) Uploading one by one takes a long time. Thus, how can i upload 40 files ??????? ...
gene next-gen sequencing written 12 months ago by 9521ljh40
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Predict function by Mutation?
... i have gene list which have nonsynonym mutation variant by DNA sequencing But i want to further know this mutation cause functional abnormal. Is there some tools for predicting function by mutation??? ...
gene next-gen snp sequencing written 13 months ago by 9521ljh40 • updated 13 months ago by Kevin Blighe69k
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Fusion orientation make sense or not
... I use TCGA data and run Structural Variant calling tools(e.g. Delly,Manta...) Then i annotate the SV breakpoint and pick up fusion gene which met different genes. ex) - SV calling output and pick up meeting different genes - GeneA--GeneA, 5to5 - GeneA--GeneC, 3to5 (pick up) ...
gene sequence next-gen sequencing written 13 months ago by 9521ljh40 • updated 13 months ago by hellosearchorg0

Latest awards to 9521ljh

Popular Question 9 months ago, created a question with more than 1,000 views. For very confused with GC bias
Voter 16 months ago, voted more than 100 times.
Scholar 18 months ago, created an answer that has been accepted. For C: Why samtools depth error
Supporter 20 months ago, voted at least 25 times.

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