User: mynameliuxiang

Reputation:
0
Status:
New User
Last seen:
3 days, 18 hours ago
Joined:
1 month ago
Email:
m*************@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by mynameliuxiang

<prev • 5 results • page 1 of 1 • next >
3
votes
0
answers
78
views
0
answers
convert 2 SE bam to PE bam (alignment BWA mem)
... Is there anything software which can convert two SE alignment bam files to one PE bam file? my SE bam files are from BWA mem ...
alignment written 21 days ago by mynameliuxiang0
0
votes
1
answer
149
views
1
answers
Comment: C: samtools filter proper paired alignment
... thank you, i got it. I mistook about supplement alignment and second alignment. your post is very useful. ...
written 4 weeks ago by mynameliuxiang0
0
votes
1
answer
149
views
1
answers
Comment: A: samtools filter proper paired alignment
... However It is stilled confused that "proper paired (filtered by flag -f 2)" bam file have different count of read1 and read2 ? ...
written 4 weeks ago by mynameliuxiang0
0
votes
1
answer
149
views
1
answers
Comment: C: samtools filter proper paired alignment
... Yes, I got this bam by BWA mem. I want to get propered alignment, using fixmate to filter, is that right? samtools fixmate test1.uniq.prop.pair.bam a.bam 33117 + 0 in total (QC-passed reads + QC-failed reads) 0 + 0 secondary 0 + 0 supplementary 0 + 0 duplicates 33117 + 0 mapped ...
written 4 weeks ago by mynameliuxiang0 • updated 4 weeks ago by h.mon24k
1
vote
1
answer
149
views
1
answer
samtools filter proper paired alignment
... I want get proper paired alignment here is my scripts $ samtools view test1.v2.4.reordered.bam -f 2 -bS - 1> test1.uniq.prop.pair.bam Next using flagstat check result bam samtools flagstat test1.uniq.prop.pair.bam 33117 + 0 in total (QC-passed reads + QC-failed reads) 0 + ...
alignment written 4 weeks ago by mynameliuxiang0

Latest awards to mynameliuxiang

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1314 users visited in the last hour