User: Markus Krupp

gravatar for Markus Krupp
Markus Krupp100
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100
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New User
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Last seen:
5 years, 7 months ago
Joined:
7 years ago
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k*******@googlemail.com

about me

Posts by Markus Krupp

<prev • 6 results • page 1 of 1 • next >
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Answer: A: Rna-Seq Data In Public Database
... ...just a little addition to Obi's reply. You can use the GEO advanced search interface: http://www.ncbi.nlm.nih.gov/gds/advanced/ ...here you can choose between several fields and also an option to list the corresponding indices. e.g. choosing the field "Platform Technology Type" and clicking "sh ...
written 6.7 years ago by Markus Krupp100
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Comment: C: Tool: Input Gen List - Output Associated Drugs
... Thanks Cdsouthan! ChEMBL and DrugBank - of course! ...and also Stich of the EMBL is also useful! ...
written 7.0 years ago by Markus Krupp100
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Tool: Input Gen List - Output Associated Drugs
... Hi BioStar, I'm curious about some software tools or web services which have to possibility to upload a gen signatures of interested (e.g. tumor gen: CD20, TP53, STAT1, ...) and output a list of drugs interfering with those gens (e.g. Rituximab against CD20, ...). So far, I just know the Connectiv ...
drug tool written 7.0 years ago by Markus Krupp100 • updated 7.0 years ago by Egon Willighagen5.2k
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Comment: C: Download Interaction Networks
... Hi Khader, also thanks for your help. ...STRING is a very good source for those interaction (...by the way I was involved in generating some data for STRING ;) ) ...but as you mentioned you have to parse the data and so far I try to skip that step. The data I ask for are "just" for temporary input ...
written 7.0 years ago by Markus Krupp100
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Comment: C: Download Interaction Networks
... Thanks Giovanni, indeed using cytoscape and export those interaction would be a good point. Many thanks! ...
written 7.0 years ago by Markus Krupp100
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Download Interaction Networks
... Hi BioStar Community, for my new project I have to consider directed interaction networks: e.g. Pathway1: A --> B B --| C Pathway 2 X --| Y ...and the ideal way to represent those relation for my purpose would be: Pathway1 - A - B - activates Pathway1 - B - C - inhibits Pathwa ...
network written 7.0 years ago by Markus Krupp100 • updated 4.5 years ago by Biostar ♦♦ 20

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