User: zunera

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zunera0
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Posts by zunera

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Comment: C: Fetching the sequence from the genome
... Thank you for you reply. I was using the wrong command for bedtools. The above command worked for me. Secondly, the bed file was not in tab delimated format. So I used awk command to convert it into tab delimated format and the issue is resolved. awk '{ for(i=1;i<=NF;i++){if(i==NF){printf ...
written 9 months ago by zunera0 • updated 9 months ago by finswimmer13k
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Local Blast Error
... While running Local BLAST I am facing this error: Error: (802.4) [blastn] [Cannot close serializing output stream] Exception: basic_ios::clear BLAST failed to write output. Can anyone help me out of this? Thank you. ...
software error written 9 months ago by zunera0 • updated 9 months ago by Benn7.9k
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Fetching the sequence from the genome
... Hello everyone, I have a genome with 4.3 GB size. I have run local blast for it. Now I want to fetch the sequence from the genome like from 700000 bps to 800000 bps. I don't have any information regarding chromosome coordinates or chromosome number etc. because it is a non-redundant data. I have tr ...
genome written 9 months ago by zunera0

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