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Posts by bimlay2
... Thanks for your comment. I actually used DESeq2 to generate DE results. The mean-dispersion trend looked weird, and I got super, super low p-values. I wasn't sure if any DE method was suited for 35 cell lines lumped into two groups. ...
... I have gene-wise expression data for 35 cell lines with ~3 runs per cell line. I also have a binary classification for each cell line associated with a biological phenomenon. I am interested in finding the genes that are most associated with the binary classification. I have tested several approach ...
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