User: tomoya

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tomoya0
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Posts by tomoya

<prev • 5 results • page 1 of 1 • next >
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Comment: C: rMATs error: unknown file type
... Thank you very much for your kind support! I figured out that rMATS 4.0.2 doesn't support MacOS now. So I decided to use the previous version (rMATS 3.2.5) and it works. ...
written 26 days ago by tomoya0
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Comment: C: rMATs error: unknown file type
... I tried gcc-6, however, I still have the same error (My operating system is macOS ver. 10.14.2). I also installed lumpy, Blas, lapack and gsl again but the result was same. Do I have to do something except moving rMATS.4.0.2 file to working directory for using rMATS correctly? Also, does python ver ...
written 28 days ago by tomoya0
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Comment: C: Some problems using rMATs
... Thank you for your suggestion. I followed the installation guidelines and found installing gcc@5 seems to be failed. I got the below error: xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun ...
written 29 days ago by tomoya0 • updated 29 days ago by WouterDeCoster37k
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Comment: C: Some problems using rMATs
... Thank you for your reply! Yes, MacOsX and I just put the rMATS files in the working directory. I think I didn't understand the basic things. ...
written 29 days ago by tomoya0
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rMATs error: unknown file type
... I'm trying to analyzing splicing pattern between two groups. However, I have some errors when I try to test the below lines; python rmats.py -b1 condition1_1.bam , condition1_2.bam -b2 condition2_1.bam , condition2_2.bam -gtf ASM223467v1.94.gtf -o rMATS -t paired -len 101 -c 0.0001 -analysis U ...
software error written 29 days ago by tomoya0 • updated 28 days ago by WouterDeCoster37k

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