Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
1
vote
0
replies
3.6k
views
Answer: A: Physical Lab Notebook for Computational Work
updated 4.3 years ago by 43k • written 9.9 years ago by 5.0k
4
votes
1
reply
7.1k
views
Answer: A: Making gene annotation from a GTF file
updated 4.3 years ago by 43k • written 10.0 years ago by 5.0k
0
votes
1
reply
7.1k
views
Answer: A: Pick random position from specific genomic regions
updated 4.3 years ago by 43k • written 10.0 years ago by 5.0k
2
votes
1
reply
2.2k
views
Answer: A: Publicy available HI-C data
updated 4.3 years ago by 43k • written 8.3 years ago by 5.0k
5
votes
2
replies
14k
views
Answer: Answer: Plotting Reads Around Tss
updated 16 months ago by 43k • written 10.5 years ago by 5.0k
2
votes
3
replies
11k
views
Answer: A: Automating Gorilla And/Or Revigo Analysis
updated 4.4 years ago by 43k • written 11.0 years ago by 5.0k
3
votes
0
replies
8.3k
views
Answer: A: Aligning Rna-Seq To Repetitive Line-1 Elements
updated 4.4 years ago by 43k • written 11.3 years ago by 5.0k
24
votes
4
replies
19k
views
Answer: A: Visualize Chromosome With Python ?
updated 4.4 years ago by 43k • written 12.8 years ago by 5.0k
1
vote
0
replies
4.8k
views
Comment: C: Parsing GTF file - Help!
updated 4.4 years ago by 43k • written 8.5 years ago by 5.0k
2
votes
1
reply
6.6k
views
Answer: A: Python-friendly tools for RNA secondary structure visualisation & manipulation
updated 4.4 years ago by 43k • written 8.7 years ago by 5.0k
2
votes
1
reply
5.9k
views
Answer: A: GFFutils very slow at creating database file. Any Idea why..?
updated 4.5 years ago by 43k • written 8.7 years ago by 5.0k
1
vote
0
replies
4.5k
views
Answer: A: The best definition to Enhancer and Promoter?
updated 4.5 years ago by 43k • written 8.8 years ago by 5.0k
18
votes
4
replies
17k
views
Answer: A: Сalculating fold-enrichment of ChIP-seq peaks intersecting with promoters (vs. g
updated 4.5 years ago by 43k • written 9.3 years ago by 5.0k
0
votes
0
replies
4.6k
views
Answer: A: Combined Tss Plots For Chip Seq Peaks
updated 4.5 years ago by 43k • written 10.1 years ago by 5.0k
0
votes
0
replies
4.1k
views
Comment: C: Python Documentation Tools
updated 4.6 years ago by 43k • written 12.7 years ago by 5.0k
8
votes
4
replies
4.0k
views
Answer: A: How Do You Maintain Flexibility In Your Code, When You Don'T Know In Advance Whi
updated 4.6 years ago by 43k • written 12.7 years ago by 5.0k
0
votes
0
replies
6.9k
views
Comment: C: Intersecting A Set Of Bam Reads With A Set Of Coordinates
updated 4.6 years ago by 43k • written 13.2 years ago by 5.0k
2
votes
0
replies
8.5k
views
Answer: A: Cannot Install Latest Version Of Deseq
updated 5.5 years ago by 43k • written 12.7 years ago by 5.0k
0
votes
0
replies
6.5k
views
Comment: C: ChromHMM Output Descriptions
6.6 years ago by Ryan Dale 5.0k
1
vote
1
reply
3.9k
views
Comment: C: Output bed file region sizes as histogram
7.0 years ago by Ryan Dale 5.0k
2
votes
1
reply
3.9k
views
Answer: A: Output bed file region sizes as histogram
7.0 years ago by Ryan Dale 5.0k
2
votes
0
replies
3.5k
views
Answer: A: How to fix my broken GTF file?
7.0 years ago by Ryan Dale 5.0k
0
votes
0
replies
3.5k
views
Comment: C: How to apply ChromHMM on ChromImpute output?
7.0 years ago by Ryan Dale 5.0k
1
vote
0
replies
5.1k
views
Comment: C: csvtk - a cross-platform, efficient, practical and pretty CSV/TSV toolkit
7.1 years ago by Ryan Dale 5.0k
1
vote
1
reply
1.9k
views
Job: Bioinformatics trainee position at NIH (Bethesda, MD, USA)
NIH python R
updated 12 months ago by 43k • written 7.2 years ago by 5.0k
4
votes
0
replies
5.9k
views
Answer: A: ChIP-seq vs. RNA-seq
7.3 years ago by Ryan Dale 5.0k
1
vote
0
replies
6.2k
views
Comment: C: Do specialized Hi-C databases exist?
7.3 years ago by Ryan Dale 5.0k
0
votes
0
replies
7.9k
views
Comment: C: ChIPseq - Identical peaks in IP and input samples
7.5 years ago by Ryan Dale 5.0k
2
votes
1
reply
4.1k
views
Answer: A: RIP-Seq: Does difference in RNA pulldown conc. between Samples and Negative Cont
7.5 years ago by Ryan Dale 5.0k
1
vote
0
replies
3.9k
views
Comment: C: epic: new ChIP-Seq caller based on the SICER algorithm
7.6 years ago by Ryan Dale 5.0k
0
votes
1
reply
11k
views
Comment: C: Best databases for Chip-Seq
7.6 years ago by Ryan Dale 5.0k
2
votes
0
replies
5.2k
views
Answer: A: Pol II chip-seq data analysis
7.6 years ago by Ryan Dale 5.0k
4
votes
2
replies
2.9k
views
Answer: A: ENCODE ChIP-Seq Control Experiments
7.6 years ago by Ryan Dale 5.0k
1
vote
0
replies
3.3k
views
Answer: A: Hi-C analysis and significant interactions
7.6 years ago by Ryan Dale 5.0k
0
votes
0
replies
2.7k
views
Comment: C: Use bedtool to get number of shared features from intersetions
7.6 years ago by Ryan Dale 5.0k
1
vote
0
replies
9.8k
views
Comment: C: ChipSeq: merge bam file before peak calling
7.6 years ago by Ryan Dale 5.0k
3
votes
1
reply
2.8k
views
Answer: A: Any idea about validating bedtools shuffle did what I desired?
7.6 years ago by Ryan Dale 5.0k
1
vote
1
reply
9.8k
views
Comment: C: ChipSeq: merge bam file before peak calling
7.6 years ago by Ryan Dale 5.0k
1
vote
1
reply
2.4k
views
Answer: A: Are there services/java libs I can use to upload files automatically for UCSC di
7.7 years ago by Ryan Dale 5.0k
0
votes
0
replies
6.7k
views
Answer: A: Old version of bioconductor's packages
7.7 years ago by Ryan Dale 5.0k
0
votes
0
replies
2.6k
views
Comment: C: I want to store a docker image reproducing a paper. Is there a host for docker i
7.7 years ago by Ryan Dale 5.0k
4
votes
1
reply
2.6k
views
Answer: A: I want to store a docker image reproducing a paper. Is there a host for docker i
7.7 years ago by Ryan Dale 5.0k
0
votes
0
replies
6.5k
views
Comment: C: ChromHMM Output Descriptions
7.7 years ago by Ryan Dale 5.0k
2
votes
0
replies
3.2k
views
Comment: C: convert GFF3 files from one genome version to another (Drosophila)
7.7 years ago by Ryan Dale 5.0k
3
votes
2
replies
6.5k
views
Answer: A: ChromHMM Output Descriptions
7.7 years ago by Ryan Dale 5.0k
2
votes
0
replies
11k
views
Answer: A: Chip-seq analysis with input and spike-in
7.7 years ago by Ryan Dale 5.0k
0
votes
0
replies
4.0k
views
Comment: C: Tools to identify enhancers from chromatin marks
7.8 years ago by Ryan Dale 5.0k
0
votes
1
reply
4.0k
views
Comment: C: Tools to identify enhancers from chromatin marks
7.8 years ago by Ryan Dale 5.0k
4
votes
2
replies
4.0k
views
Answer: A: Tools to identify enhancers from chromatin marks
7.8 years ago by Ryan Dale 5.0k
0
votes
1
reply
15k
views
Answer: A: error installing samtools on ubuntu
7.8 years ago by Ryan Dale 5.0k
215 results • Page 1 of 5
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6