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Answer: A: Physical Lab Notebook for Computational Work
updated 4.3 years ago by 43k • written 9.9 years ago by 5.0k
4
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7.1k
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Answer: A: Making gene annotation from a GTF file
updated 4.3 years ago by 43k • written 10.0 years ago by 5.0k
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7.2k
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Answer: A: Pick random position from specific genomic regions
updated 4.3 years ago by 43k • written 10.0 years ago by 5.0k
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Answer: A: Publicy available HI-C data
updated 4.4 years ago by 43k • written 8.3 years ago by 5.0k
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2
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14k
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Answer: Answer: Plotting Reads Around Tss
updated 16 months ago by 43k • written 10.5 years ago by 5.0k
2
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3
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11k
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Answer: A: Automating Gorilla And/Or Revigo Analysis
updated 4.4 years ago by 43k • written 11.0 years ago by 5.0k
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Answer: A: Aligning Rna-Seq To Repetitive Line-1 Elements
updated 4.4 years ago by 43k • written 11.3 years ago by 5.0k
24
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Answer: A: Visualize Chromosome With Python ?
updated 4.4 years ago by 43k • written 12.8 years ago by 5.0k
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1
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6.6k
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Answer: A: Python-friendly tools for RNA secondary structure visualisation & manipulation
updated 4.4 years ago by 43k • written 8.7 years ago by 5.0k
2
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1
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5.9k
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Answer: A: GFFutils very slow at creating database file. Any Idea why..?
updated 4.5 years ago by 43k • written 8.7 years ago by 5.0k
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Answer: A: The best definition to Enhancer and Promoter?
updated 4.5 years ago by 43k • written 8.8 years ago by 5.0k
18
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Answer: A: Сalculating fold-enrichment of ChIP-seq peaks intersecting with promoters (vs. g
updated 4.5 years ago by 43k • written 9.3 years ago by 5.0k
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Answer: A: Combined Tss Plots For Chip Seq Peaks
updated 4.5 years ago by 43k • written 10.1 years ago by 5.0k
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4
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4.0k
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Answer: A: How Do You Maintain Flexibility In Your Code, When You Don'T Know In Advance Whi
updated 4.6 years ago by 43k • written 12.7 years ago by 5.0k
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8.5k
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Answer: A: Cannot Install Latest Version Of Deseq
updated 5.5 years ago by 43k • written 12.7 years ago by 5.0k
2
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1
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3.9k
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Answer: A: Output bed file region sizes as histogram
7.0 years ago by Ryan Dale 5.0k
2
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3.5k
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Answer: A: How to fix my broken GTF file?
7.0 years ago by Ryan Dale 5.0k
4
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5.9k
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Answer: A: ChIP-seq vs. RNA-seq
7.3 years ago by Ryan Dale 5.0k
2
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4.1k
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Answer: A: RIP-Seq: Does difference in RNA pulldown conc. between Samples and Negative Cont
7.5 years ago by Ryan Dale 5.0k
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5.2k
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Answer: A: Pol II chip-seq data analysis
7.6 years ago by Ryan Dale 5.0k
4
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2
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2.9k
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Answer: A: ENCODE ChIP-Seq Control Experiments
7.6 years ago by Ryan Dale 5.0k
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3.3k
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Answer: A: Hi-C analysis and significant interactions
7.6 years ago by Ryan Dale 5.0k
3
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1
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2.8k
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Answer: A: Any idea about validating bedtools shuffle did what I desired?
7.6 years ago by Ryan Dale 5.0k
1
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1
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2.4k
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Answer: A: Are there services/java libs I can use to upload files automatically for UCSC di
7.7 years ago by Ryan Dale 5.0k
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6.7k
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Answer: A: Old version of bioconductor's packages
7.7 years ago by Ryan Dale 5.0k
4
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1
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2.6k
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Answer: A: I want to store a docker image reproducing a paper. Is there a host for docker i
7.7 years ago by Ryan Dale 5.0k
3
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2
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6.5k
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Answer: A: ChromHMM Output Descriptions
7.7 years ago by Ryan Dale 5.0k
2
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0
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11k
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Answer: A: Chip-seq analysis with input and spike-in
7.7 years ago by Ryan Dale 5.0k
4
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2
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4.0k
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Answer: A: Tools to identify enhancers from chromatin marks
7.8 years ago by Ryan Dale 5.0k
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1
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15k
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Answer: A: error installing samtools on ubuntu
7.8 years ago by Ryan Dale 5.0k
2
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1
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3.1k
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Answer: A: BED to BigBed vonversion problem.
7.9 years ago by Ryan Dale 5.0k
5
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2
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3.6k
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Answer: A: ChromHMM annotation new cell line
7.9 years ago by Ryan Dale 5.0k
9
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0
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3.6k
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Answer: A: Time Management Strategies and Advice for Bioinformaticians
7.9 years ago by Ryan Dale 5.0k
6
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2
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3.5k
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Answer: A: How do I filter a bam on length with pybedtools?
7.9 years ago by Ryan Dale 5.0k
7
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1
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9.7k
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Answer: A: Good Habit for Bioinformatics Analyst or Scientist
8.0 years ago by Ryan Dale 5.0k
1
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0
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2.1k
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Answer: A: Normalization of Hi-C data
8.0 years ago by Ryan Dale 5.0k
3
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7.8k
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Answer: A: Visualization of Homer mergePeaks output Venn?
8.0 years ago by Ryan Dale 5.0k
2
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3.9k
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Answer: A: GFF3 ID field: "Official" nomenclature
8.1 years ago by Ryan Dale 5.0k
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2.0k
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Answer: A: Re-creating a heatmap
8.1 years ago by Ryan Dale 5.0k
5
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2
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11k
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Answer: A: Meaning of Chromatin state
8.2 years ago by Ryan Dale 5.0k
2
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0
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5.3k
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Answer: A: enhancer annotation for mouse mm9
8.6 years ago by Ryan Dale 5.0k
3
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1
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6.2k
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Answer: Answer: Do specialized Hi-C databases exist?
updated 19 months ago by 43k • written 8.7 years ago by 5.0k
11
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4
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9.9k
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Answer: A: Matplotlib comprehensive chromosome drawing
8.8 years ago by Ryan Dale 5.0k
0
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2.3k
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Answer: Answer: issue with VISTA enhancer database
updated 15 months ago by 43k • written 8.9 years ago by 5.0k
3
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2
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2.2k
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Answer: Answer: ChipSeq data analysis
updated 15 months ago by 43k • written 8.9 years ago by 5.0k
4
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1.8k
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Answer: Answer: piRNAs and their promoters
updated 15 months ago by 43k • written 8.9 years ago by 5.0k
2
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1
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4.0k
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Answer: Answer: normalize ChIP-seq data by copy number variation
updated 14 months ago by 43k • written 9.0 years ago by 5.0k
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2.5k
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Answer: Answer: Chromatin state segmentation - direction of effect of the identified enhancer
updated 14 months ago by 43k • written 9.0 years ago by 5.0k
3
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0
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2.8k
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Answer: Answer: RNA-seq: how big should be the library?
updated 21 months ago by 43k • written 9.0 years ago by 5.0k
3
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0
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12k
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Answer: Answer: How to parse GFF3 file and get start and end coordinates in Python
updated 22 months ago by 43k • written 9.0 years ago by 5.0k
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