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Showing :
questions
4
votes
8
replies
26k
views
bcftools-merge for vcf files
snp
bcftools
written 4.6 years ago by
evelyn
▴ 220
10
votes
13
replies
7.2k
views
snp density plot
snp
updated 2.8 years ago by
Curls
▴ 40 • written 4.5 years ago by
evelyn
▴ 220
3
votes
5
replies
7.1k
views
how to remove duplicate SNP rows in vcf using bcftools norm
SNP
updated 3.1 years ago by
brianaloredana
▴ 20 • written 4.1 years ago by
evelyn
▴ 220
0
votes
18
replies
1.8k
views
freebayes error variant calling
snp
3.6 years ago by
evelyn
▴ 220
3
votes
12
replies
3.9k
views
how to get one vcf file for freebayes from many bam files
snp
updated 19 months ago by
Ram
43k • written 3.6 years ago by
evelyn
▴ 220
0
votes
4
replies
868
views
freebayes SNP calling question
snp
updated 3.6 years ago by
totoroGirl
• 0 • written 3.6 years ago by
evelyn
▴ 220
0
votes
8
replies
1.3k
views
Error in freebayes SNP calling
snp
updated 3.6 years ago by
Biostar
20 • written 3.6 years ago by
evelyn
▴ 220
1
vote
1
reply
1.0k
views
Finding gene ontology terms for a list of genes
gene
3.6 years ago by
evelyn
▴ 220
0
votes
9
replies
1.6k
views
error in MarkDuplicates Picard
sequencing
3.6 years ago by
evelyn
▴ 220
0
votes
0
replies
621
views
WGCNA to Cytoscape which file to use
rna-seq
3.7 years ago by
evelyn
▴ 220
1
vote
5
replies
1.8k
views
How to create a file from WGCNA to Cytoscape
next-gen
updated 2.9 years ago by
Kevin Blighe
87k • written 3.7 years ago by
evelyn
▴ 220
0
votes
3
replies
1.5k
views
WGCNA to Cytoscape Error
R
3.7 years ago by
evelyn
▴ 220
0
votes
0
replies
903
views
heat map WGCNA question
r
3.7 years ago by
evelyn
▴ 220
3
votes
10
replies
1.8k
views
how to find gene ontology for genes using RNA-seq data
rna-seq
updated 3.7 years ago by
MaxF
▴ 120 • written 3.7 years ago by
evelyn
▴ 220
0
votes
0
replies
922
views
Problem in LD-based SNP pruning using SNPRelate
snp
SNPRelate
R
updated 3.7 years ago by
zx8754
11k • written 3.7 years ago by
evelyn
▴ 220
3
votes
1
reply
796
views
how to choose some samples from a vcf files
snp
updated 3.7 years ago by
WouterDeCoster
47k • written 3.7 years ago by
evelyn
▴ 220
1
vote
6
replies
3.6k
views
WGCNA heatmap error
RNA-Seq
3.7 years ago by
evelyn
▴ 220
0
votes
0
replies
565
views
SNPRelate for population structure for GWAS SNP data
SNP
3.8 years ago by
evelyn
▴ 220
2
votes
12
replies
4.3k
views
7 follow
scatter plot for DAPC
snp
updated 15 months ago by
Jean-Karim Heriche
27k • written 4.6 years ago by
evelyn
▴ 220
5
votes
3
replies
3.8k
views
how to get transcript.fasta from gff file
next-gen
updated 2.8 years ago by
Juke34
8.5k • written 3.8 years ago by
evelyn
▴ 220
0
votes
4
replies
992
views
salmon TPM output to linear regression in R
RNA-Seq
salmon
lm
3.9 years ago by
evelyn
▴ 220
3
votes
24
replies
2.3k
views
salmon output to linear models in R
R
3.9 years ago by
evelyn
▴ 220
1
vote
4
replies
1.9k
views
RNA seq analysis using linear regression
RNA-Seq
updated 3.9 years ago by
josephbrown
• 0 • written 3.9 years ago by
evelyn
▴ 220
2
votes
7
replies
1.2k
views
How to add annotation for differentially expressed genes obtained using DESeq2
RNA-Seq
4.0 years ago by
evelyn
▴ 220
2
votes
5
replies
2.2k
views
hisat2 salmon alignment error
RNA-Seq
updated 4.0 years ago by
Rob
6.5k • written 4.0 years ago by
evelyn
▴ 220
2
votes
3
replies
2.6k
views
hisat2 error index out of range
RNA-Seq
4.0 years ago by
evelyn
▴ 220
0
votes
7
replies
1.4k
views
fastqc duplicate reads
sequencing
updated 4.0 years ago by
WouterDeCoster
47k • written 4.0 years ago by
evelyn
▴ 220
0
votes
5
replies
1.7k
views
RNA read alignment using transcriptome
sequencing
updated 4.0 years ago by
ATpoint
81k • written 4.0 years ago by
evelyn
▴ 220
0
votes
4
replies
818
views
salmon light weight alignment mode
sequencing
4.0 years ago by
evelyn
▴ 220
0
votes
2
replies
722
views
tximport to dseq2 error
sequencing
4.0 years ago by
evelyn
▴ 220
10
votes
19
replies
3.8k
views
Salmon to tximport error
sequencing
R
Bioconductor
updated 4.0 years ago by
zx8754
11k • written 4.0 years ago by
evelyn
▴ 220
1
vote
5
replies
1.1k
views
rseqc bed file for library type paired end RNA fastq files
sequence
4.0 years ago by
evelyn
▴ 220
5
votes
8
replies
6.4k
views
FastQC on multiple paired end files
RNA-Seq
4.1 years ago by
evelyn
▴ 220
0
votes
9
replies
604
views
download data problem
sequence
updated 4.1 years ago by
tothepoint
▴ 800 • written 4.1 years ago by
evelyn
▴ 220
0
votes
10
replies
671
views
vcf file SNP position extraction
SNP
4.1 years ago by
evelyn
▴ 220
0
votes
2
replies
494
views
extracting one snp position from a vcd file
SNP
updated 4.1 years ago by
ATpoint
81k • written 4.1 years ago by
evelyn
▴ 220
0
votes
2
replies
1.9k
views
bcftools sec for multiple files
snp
4.2 years ago by
evelyn
▴ 220
1
vote
2
replies
908
views
SNPs not filtered from a GATK vcf file
SNP
updated 4.3 years ago by
inedraylig
▴ 60 • written 4.3 years ago by
evelyn
▴ 220
0
votes
2
replies
602
views
Representation of common SNPs in text files
SNP
4.3 years ago by
evelyn
▴ 220
3
votes
2
replies
663
views
Find common SNPs between high and low depth sequence data
snp
bcftools
vcf
updated 4.3 years ago by
zx8754
11k • written 4.3 years ago by
evelyn
▴ 220
5
votes
10
replies
2.4k
views
Filter unique SNPs (rows) in VCF/text file
snp
vcf
bash
updated 4.4 years ago by
zx8754
11k • written 4.4 years ago by
evelyn
▴ 220
0
votes
0
replies
1.1k
views
variant calling with platypus
snp
4.4 years ago by
evelyn
▴ 220
0
votes
15
replies
3.2k
views
bcftools multiple samples
snp
4.4 years ago by
evelyn
▴ 220
4
votes
9
replies
5.0k
views
GATK multiple samples
snp
updated 4.4 years ago by
Pierre Lindenbaum
160k • written 4.4 years ago by
evelyn
▴ 220
3
votes
12
replies
2.4k
views
split sorted bam file chromosome wise
snp
updated 4.4 years ago by
inedraylig
▴ 60 • written 4.4 years ago by
evelyn
▴ 220
1
vote
6
replies
5.2k
views
how to merge gvcf using bcftools
snp
4.4 years ago by
evelyn
▴ 220
0
votes
5
replies
1.3k
views
non-SNP variants in a vcf merge file
snp
updated 4.4 years ago by
Kevin Blighe
87k • written 4.5 years ago by
evelyn
▴ 220
0
votes
1
reply
2.4k
views
[W::bcf_hdr_check_sanity] GL should be declared as Number=G
snp
updated 4.5 years ago by
WouterDeCoster
47k • written 4.5 years ago by
evelyn
▴ 220
4
votes
1
reply
777
views
problem with vcf file by gatk
snp
updated 4.5 years ago by
Satyajeet Khare
★ 1.6k • written 4.5 years ago by
evelyn
▴ 220
6
votes
14
replies
13k
views
samtools index error
SNP
updated 4.5 years ago by
JC
13k • written 4.5 years ago by
evelyn
▴ 220
68 results • Page
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