User: Wan Shi Tong

gravatar for Wan Shi Tong
Wan Shi Tong60
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Posts by Wan Shi Tong

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Comment: C: Merge VCFs with overlapping samples
... Yeah, that is exactly my problem. vcf-merge and bcftools merge do not merge same samples. They create new entries for each repeated sample unfortunately. ...
written 4 weeks ago by Wan Shi Tong60
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Merge VCFs with overlapping samples
... I have VCFs that have some overlapping samples, is there a tool that can do this... ###VCF1: CHR POS ID ALT REF QUAL INFO FILTER FORMAT Sample1 Sample2 Sample3 SNP1... SNP2... SNP3... --- ###VCF2: CHR POS ID ALT REF QUAL INFO FILTER FORMAT Sample2 Sample3 Sampl ...
vcf tools snp written 4 weeks ago by Wan Shi Tong60 • updated 10 days ago by omg what am I doing...10
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Answer: A: Need sample vcf file containing Complete Exome sequences
... Try VCFs from the 1000 Genomes Project. Or VCFs in the NCBI. ...
written 7 weeks ago by Wan Shi Tong60
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Answer: A: How to get imputation accuracy/quality after using IMPUTE2?
... I actually figured it out. Incase anyone ever has the same question. IMPUTE2 outputs a file called info where it has imputation quality information. Depending on the command line arguments you choose you can get more specific statistics. https://mathgen.stats.ox.ac.uk/impute/output_file_options.html ...
written 8 weeks ago by Wan Shi Tong60
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How to get imputation accuracy/quality after using IMPUTE2?
... I know I might be missing something obvious, but how do I get the accuracy/quality of my imputation after using IMPUTE2 (or any imputation tool)? How is the quality of an imputation measured? Thank you! ...
impute2 impute statistics written 8 weeks ago by Wan Shi Tong60

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Teacher 8 weeks ago, created an answer with at least 3 up-votes. For A: How to get imputation accuracy/quality after using IMPUTE2?

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