User: michele.tebaldi.92

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Posts by michele.tebaldi.92

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Comment: C: Plotting Bar charts in R
... The Nuclei information is useless for visualization, i needed it before to classify samples into sampleType :) i tried your code, but there's a problem for data$variable, because it outputs only NAs. Can you explain me what are you trying to do there? Many thanks! edit: I solved! Data$variable ...
written 7 months ago by michele.tebaldi.9210
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Plotting Bar charts in R
... Hi everyone, I'm new to R plotting functionalities. I'm trying to plot an horizontal stacked bar plot divided in three groups based on my table. The table is this: >head(chart_table) Uniquely.mapped.Reads Non.uniquely.Mapped.Reads Nuclei Sample GC065783 ...
R graph plot written 7 months ago by michele.tebaldi.9210 • updated 7 months ago by zx87548.8k
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Comment: C: Extract overrepresented sequences from fastq or fastqc
... sorry, im new here. i'll edit my question to add more details. you're right, i was too confident. ...
written 9 months ago by michele.tebaldi.9210
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Extract overrepresented sequences from fastq or fastqc
... Hi everybody. I'm doing single-cell rna-seq analysis. My starting point are fastq files with paired end reads from NexteraXT platform. Read length is 75 bp. I've trimmed my reads for both quality and adapter content with Trim-Galore, then I performed Fastqc-Multiqc to check if everything is ok. ...
fastq overrepresented rna-seq fastqc written 9 months ago by michele.tebaldi.9210 • updated 9 months ago by Ido Tamir5.0k

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