User: c_dampier

gravatar for c_dampier
c_dampier50
Reputation:
50
Status:
New User
Location:
USA/UVA
Last seen:
1 day, 13 hours ago
Joined:
3 weeks ago
Email:
c******************@gmail.com

Posts by c_dampier

<prev • 5 results • page 1 of 1 • next >
1
vote
0
answers
118
views
0
answers
Comment: C: Can Salmon's quantification method accommodate concatenated reads of varying len
... Thank you, [ATpoint][1]. Your comments are helpful, as is the link to the very informative discussion on read pairs with different lengths. I regret not finding it when I initially started searching for questions related to mine. Thank you for the link. [1]: https://www.biostars.org/u/25721/ ...
written 20 days ago by c_dampier50
0
votes
2
answers
182
views
2
answers
Comment: C: awk or/and cut command for reformatting sequence header identifiers of fastq fil
... You're welcome, qinglong. I apologize for potentially leading you astray with my original code. Glad h.mon was there to save us. ...
written 20 days ago by c_dampier50
0
votes
2
answers
182
views
2
answers
Comment: C: awk or/and cut command for reformatting sequence header identifiers of fastq fil
... Thank you, [h.mon][1]. I think the edited code will be safer. [1]: https://www.biostars.org/u/6093/ ...
written 20 days ago by c_dampier50
3
votes
2
answers
182
views
2
answers
Answer: A: awk or/and cut command for reformatting sequence header identifiers of fastq fil
... I think this (edited per h.mon comments) awk code will give you the desired output: awk 'NR%4==1 {$3=""} NR%4==3 {$0=substr($0,1,1)} {print $0}' The first rule finds each 4th line starting with line 1, and its associated action changes the third field (separated by " ") to empty. The next ru ...
written 20 days ago by c_dampier50
4
votes
0
answers
118
views
0
answers
Can Salmon's quantification method accommodate concatenated reads of varying length (from independent sequencers) in a single fastq file?
... Good evening My question is whether it is more appropriate to feed Salmon a single concatenated fastq file or multiple sequencer- and read-length-specific fastq files when the reads in the fastq file (or files) have been generated at different times with different sequencing lengths for a given sam ...
salmon rna-seq sequencing written 21 days ago by c_dampier50

Latest awards to c_dampier

Scholar 20 days ago, created an answer that has been accepted. For A: awk or/and cut command for reformatting sequence header identifiers of fastq fil
Teacher 20 days ago, created an answer with at least 3 up-votes. For A: awk or/and cut command for reformatting sequence header identifiers of fastq fil

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 905 users visited in the last hour