User: Kanoo

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Kanoo0
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Posts by Kanoo

<prev • 5 results • page 1 of 1 • next >
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Comment: C: need to identify CDS (translation) for gene models predicted by Cufflinks and St
... Hi, I encountered a problem similar to what you described. I need to find the CDS (start/end codon) in my transcript models in GFF3 format. Have you solved it? Anyway, thanks! ...
written 10 days ago by Kanoo0
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How to re-annotate the structure of gene against a known genomic file
... I have alreday got genome assembly and annotation of Glycyrrhiza uralensis, a medicinal legume,but the annotation is not correct enough.So,I want to re-annotate the structure of its structure,depend on "Gur.draft-genome.20151208.dna.fasta.gz",which has been assembly by Mochida Keiichi in 2015.How to ...
rna-seq written 6 months ago by Kanoo0
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Comment: A: Warning: no reference transcripts were found when map the reads to reference seq
... I have the same problem,and don't know how to solve it. ...
written 8 months ago by Kanoo0
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Comment: C: Solve the problem of Hisat2:Align reads to genome
... Ok,I will check out.Thanks! ...
written 9 months ago by Kanoo0
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Solve the problem of Hisat2:Align reads to genome
... Firstly, I set an index through Hisat2. When I use Hisat2 to alignment, there appears an error-- `Error:could not open alignment output file`. But I have set an output file already, and it's properties: drwxrwxr-x. The following is my attempt to eliminate the error: 1.I think maybe the folder is ...
software error alignment blog rna-seq written 9 months ago by Kanoo0 • updated 9 months ago by Michael Dondrup47k

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