User: oscar.nvergara

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Posts by oscar.nvergara

<prev • 6 results • page 1 of 1 • next >
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Answer: A: Inconsistent number Pandaseq vs grep
... Hi! So sorry for taking your time. I could find by my self the answer. First of all, I got confused about the file I was counting, it didin´t have 200.000 but 370.000. Second and more important, I haven't figured out that PANDASEQ does me merging using all your cores, so it does a parallel merging ...
written 10 days ago by oscar.nvergara0
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Comment: C: Inconsistent number Pandaseq vs grep
... Hi, sorry for my mistake. I forgot to mention that I converted the fastq to fasta and counted. Them with that command. In the other hand fasQC also red the fastq and counted around 200.000 sequences. I tried to use your suggestion replacing my.fastq with my file names, but it doesn´t work. edit: ...
written 10 days ago by oscar.nvergara0
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Inconsistent number Pandaseq vs grep
... Hi, I have a doubt about the number of sequences in a paired end merging using PANDASEQ and the sequencing counting. Let me explain, I merged a forward and reverse set of sequences using pandaseq, before this I checked the number using the command EDIT: I forgot to mention I converted the fastq ...
assembly sequence written 10 days ago by oscar.nvergara0
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Is there a paired end joiner which writes also the reads before merging?
... Hi, I have a weird question. But I'm looking for a software which not just merge the paired reads but also writes them in a new file. When a software matches a pair of reads it writes them in the output fastq (or fasta), but you don't have the option of knowing what they paired. I've checked some o ...
software error assembly sequence written 15 days ago by oscar.nvergara0 • updated 6 days ago by Biostar ♦♦ 20
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Comment: C: How to split fastq cointaing shared forward barcodes but different reverse ones?
... Sadly I don't know. I received that job because I used to analize data but already demultiplexed, or at least without mixed barcordes, as you say in the sequencing center they just didn't do it, and Im trying to deal with that. I asked a friend of mine who also works a lot with Illumina paired end s ...
written 17 days ago by oscar.nvergara0
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How to split fastq cointaing shared forward barcodes but different reverse ones?
... Hi, I need your help because I'm completely lost with that. I received a paired-end sequencing containing many samples in a forward and reverse paired end fastq set of files as shown below. Librerires_S4_L001_R1_001.fastq Librerires_S4_L001_R2_001.fastq I was expecting to find a software ...
software error next-gen sequencing written 17 days ago by oscar.nvergara0

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