User: Liftedkris

gravatar for Liftedkris
Liftedkris0
Reputation:
0
Status:
New User
Last seen:
47 minutes ago
Joined:
1 month, 2 weeks ago
Email:
c*********@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by Liftedkris

<prev • 20 results • page 1 of 2 • next >
0
votes
0
answers
36
views
0
answers
R analysis for read counts using edgeR
... Hi fellows, I performed RNAseq analysis of human neutrophils infected by Aspergillus fumigatus. Everything seemed to work fine but during the differential expression analysis using EdgeR, I used the standard p.value cut off of 0.05 but surprisingly no genes were found for the conditions at that p. ...
rna-seq written 3 hours ago by Liftedkris0 • updated 1 hour ago by ATpoint15k
0
votes
0
answers
103
views
0
answers
Comment: C: differential expression analysis using edgeR
... thanks for the response but still does not work. it seems the problem is with the minus sign (-). i have been wondering what went wrong ...
written 7 days ago by Liftedkris0
0
votes
0
answers
103
views
0
answers
Comment: C: differential expression analysis using edgeR
... Thanks for this suggestion but I have tried it but it still doesn’t work ...
written 7 days ago by Liftedkris0
1
vote
0
answers
103
views
0
answers
differential expression analysis using edgeR
... hello experts, i am using EdgeR for my differential expression analysis. i want to define the contrast of interest but a bug appears with the following error message "unexpected input in "...…." i have gone through my command but i did not detect any typo or any error. here is my command line ...
differential expression analysis written 7 days ago by Liftedkris0 • updated 7 days ago by ATpoint15k
6
votes
1
answer
123
views
6 follow
1
answer
solving heap size problem in linux
... hi. i am trying to remove contaminants from my fastq files using bbduk but it gives the following error. it says invalid maximum heapn size. i am using a linux system and do not know how to change the heap size or how to solve the problem. any help would be appreciated. thanks bbduk.sh in1=D1C1 ...
rna-seq written 19 days ago by Liftedkris0 • updated 19 days ago by h.mon24k
0
votes
0
answers
92
views
0
answers
Removal of contamints from RNA-seq data
... Hi, I have a set of paired end RNAseq reads that are highly contaminated by rRNA, vectors, mtDNA, etc. Now I need a bioinformatic tool to remove these contaminants from these files.. please could anyone suggest for me a tool to use or how to remove these contaminants from the files? Thanks ...
rna-seq written 21 days ago by Liftedkris0
0
votes
0
answers
202
views
0
answers
Comment: C: read count normalization
... galaxy is giving me this error: Fatal error: Exit code 1 () Error: Sample IDs in factors file and count matrix don't match ...
written 4 weeks ago by Liftedkris0
0
votes
0
answers
202
views
0
answers
Comment: C: read count normalization
... > list.files(pattern = ".count") [1] "D1C180_Host_infected_rep1.sorted_name.count" [2] "D1C30_Host_infected_rep1.sorted_name.count" [3] "D1C90_Host_infected_rep1.sorted_name.count" [4] "D1T0_Host_infected_rep1.sorted_name.count" [5] "D1T180_Host_infected_rep1.sort ...
written 4 weeks ago by Liftedkris0 • updated 4 weeks ago by Benn6.6k
0
votes
0
answers
202
views
0
answers
Comment: C: read count normalization
... yes the list.file(pattern = ".count"). the data is related to human neutrophils infected with aspargillus ...
written 4 weeks ago by Liftedkris0
0
votes
0
answers
202
views
0
answers
Comment: C: read count normalization
... thanks for the response. i have been trying to add the read counts to gallaxy but it keeps saying: "no tabular dataset available" and the column is not even clickable... i do not know exactly what i am doing wrong ...
written 4 weeks ago by Liftedkris0

Latest awards to Liftedkris

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 789 users visited in the last hour