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5
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8.0k
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Answer: A: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
3.5 years ago by Kamil ★ 2.3k
1
vote
0
replies
5.1k
views
Answer: A: How To Convert Hg19_Known_Gene From Text Format To Gtf Or Bed?
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 2.3k
3
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0
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9.6k
views
Answer: A: Obtaining Ucsc Tables Via Ftp And Converting Them To Proper Gff3 Via Genepredtog
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 2.3k
2
votes
0
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3.2k
views
Answer: A: dbSNP: minor alleles for a list of SNPs
updated 4.3 years ago by 43k • written 8.3 years ago by ★ 2.3k
6
votes
1
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15k
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Answer: A: Is there a fixed convention for matching dna/rna/aa letter symbols to colors?
updated 4.4 years ago by 43k • written 8.3 years ago by ★ 2.3k
1
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0
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2.4k
views
Answer: A: how to find snps in the 25kb upstream and downstream of one gene
updated 4.4 years ago by 43k • written 8.4 years ago by ★ 2.3k
3
votes
1
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3.5k
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Answer: A: Beagle files using the latest 1000 genomes
updated 4.4 years ago by 43k • written 8.4 years ago by ★ 2.3k
0
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0
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3.1k
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Answer: A: batch program to convert nucleotide into protein
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 2.3k
1
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0
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1.8k
views
Answer: A: Question about RNA-seq and chipseq quality table/ fig
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 2.3k
1
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1
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8.4k
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Answer: Answer: how to merge overlapping intervals in a bedgraph file
updated 20 months ago by 43k • written 8.5 years ago by ★ 2.3k
4
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1
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6.3k
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Answer: A: DNA binding site motif database
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 2.3k
0
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2
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1.9k
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Answer: A: can not get the alignment result from needle alignment
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 2.3k
0
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0
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6.5k
views
Answer: A: TruSeq strand-specificity in rsem-calculate-expression
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 2.3k
3
votes
2
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4.7k
views
Answer: A: problem with KEGG pathway gene extraction
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 2.3k
0
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0
replies
2.0k
views
Answer: A: Error in camera function in limma
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 2.3k
3
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0
replies
4.1k
views
Answer: A: Difference between pair alignment rate and properly paired reads
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 2.3k
0
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1
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3.5k
views
Answer: A: featureCounts/HTSeq-count problem with different annotation files
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 2.3k
1
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1
reply
14k
views
Answer: A: paired end illumina reads
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 2.3k
0
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0
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2.4k
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Answer: A: RNAseq project ideas for young intern with MISO?
updated 4.5 years ago by 43k • written 8.7 years ago by ★ 2.3k
0
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0
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2.0k
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Answer: A: Affymetrix Gene Lists?
updated 4.5 years ago by 43k • written 8.8 years ago by ★ 2.3k
1
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1
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3.7k
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Answer: A: RNA-seq: differentially expressed genes without genome reference
updated 5.6 years ago by 43k • written 8.2 years ago by ★ 2.3k
23
votes
3
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57k
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Answer: A: Calculating TPM from featureCounts output
6.6 years ago by Kamil ★ 2.3k
1
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0
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6.5k
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Answer: A: Download Transcription Factor Targeting Genes Data
7.5 years ago by Kamil ★ 2.3k
2
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0
replies
28k
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Answer: A: How To Identify Targets Of A Transcription Factor ?
7.5 years ago by Kamil ★ 2.3k
2
votes
0
replies
24k
views
Answer: A: How Can I Find Target Genes Of A Transcription Factor?
7.5 years ago by Kamil ★ 2.3k
1
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0
replies
4.4k
views
Answer: A: quantify signal in a chromosomal interval in different .bw files
8.0 years ago by Kamil ★ 2.3k
0
votes
0
replies
3.1k
views
Answer: Answer: automated gene ontology enrichment for simple gene list (not microarray data)
updated 21 months ago by 43k • written 8.2 years ago by ★ 2.3k
0
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1
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2.2k
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Answer: A: quick question on paired RNAseq reads
8.2 years ago by Kamil ★ 2.3k
2
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0
replies
2.0k
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Answer: A: TBLASTN on a large DNA database (352GB)
8.5 years ago by Kamil ★ 2.3k
4
votes
0
replies
3.7k
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Answer: A: why is there a different results with normal fit and contrast matrix fit ?
8.5 years ago by Kamil ★ 2.3k
4
votes
0
replies
4.4k
views
Answer: A: Merge 2 files based on rs number but keep all info only from the first file
8.5 years ago by Kamil ★ 2.3k
0
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1
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3.6k
views
Answer: A: Basic SNP / RSID question
8.5 years ago by Kamil ★ 2.3k
4
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0
replies
4.0k
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Answer: A: Single cell RNA seq data analysis
8.6 years ago by Kamil ★ 2.3k
0
votes
1
reply
4.9k
views
Answer: Answer: pathway mapping using KEGG
updated 19 months ago by 43k • written 8.6 years ago by ★ 2.3k
3
votes
1
reply
10k
views
Answer: A: Get Sra Ids From Geo
8.7 years ago by Kamil ★ 2.3k
1
vote
0
replies
2.8k
views
Answer: Answer: Is there a tool to retrive transcription factors (Tfs) which have the common bin
updated 18 months ago by 43k • written 8.7 years ago by ★ 2.3k
4
votes
1
reply
15k
views
Answer: A: Rank Normalization of genes in Expression Data
8.7 years ago by Kamil ★ 2.3k
1
vote
0
replies
30k
views
Answer: Answer: Number Of Reads In A Sam File Which Are Assigned To Each Chromosome?
updated 17 months ago by 43k • written 8.7 years ago by ★ 2.3k
0
votes
0
replies
3.7k
views
Answer: Answer: Using Ensembl API to get a Gene ID from a protein ID
updated 18 months ago by 43k • written 8.7 years ago by ★ 2.3k
1
vote
0
replies
2.1k
views
Answer: Answer: How to find Minimum dominating set in a biological network
updated 18 months ago by 43k • written 8.7 years ago by ★ 2.3k
2
votes
1
reply
2.6k
views
Answer: Answer: paper reference of SRA dataset
updated 18 months ago by 43k • written 8.7 years ago by ★ 2.3k
0
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0
replies
2.7k
views
Answer: Answer: how to deal with multiple probes, control probes and probes with no ENTREX gene
updated 16 months ago by 43k • written 8.8 years ago by ★ 2.3k
5
votes
1
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4.3k
views
Answer: Answer: count the number of transcription factor binding sites
updated 16 months ago by 43k • written 8.8 years ago by ★ 2.3k
1
vote
0
replies
2.4k
views
Answer: A: Transcription factor binding on DHS sites
8.8 years ago by Kamil ★ 2.3k
3
votes
1
reply
4.3k
views
Answer: Answer: Is There Any Way To Retrieve Protein Sequences In Fasta Format using a Kegg Path
updated 23 months ago by 43k • written 9.1 years ago by ★ 2.3k
4
votes
1
reply
4.6k
views
Answer: Answer: FAST: FAST Analysis of Sequences Toolbox
updated 22 months ago by 43k • written 9.0 years ago by ★ 2.3k
1
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1
reply
7.3k
views
Answer: Answer: How to find start and stop codon for sequences in a fasta file?
updated 21 months ago by 43k • written 9.0 years ago by ★ 2.3k
0
votes
0
replies
6.5k
views
Answer: A: Mark duplicates for single end reads: Why only 5'end?
9.0 years ago by Kamil ★ 2.3k
10
votes
1
reply
17k
views
Answer: A: How to determine if SRA file is single or paired end?
9.0 years ago by Kamil ★ 2.3k
6
votes
1
reply
33k
views
Answer: A: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
9.0 years ago by Kamil ★ 2.3k
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