User: mandhirsikander

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Posts by mandhirsikander

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MsiSensor Msi_Germline output
... I am not able to understand the msi germline output as generated from paired normal tumor MSI analysis using Msisensor. I want to know what does the "Genotype" Legion signify in this case. Here's an example chr. Location Repeat time RepeatUnit Genotype chr10 5765768 11 A ...
rna-seq written 5 days ago by mandhirsikander0
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Comment: C: Project suggestions with paired Tumour and Normal RNA Seq data libraries
... Thanks for the reply! I have been trying to work at MSI detection but I have hit rock bottom and not able to proceed hence it is a desperate approach I have been forced to try. ...
written 9 weeks ago by mandhirsikander0
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Project suggestions with paired Tumour and Normal RNA Seq data libraries
... I am a Bachelor's student and as part of my 3 month project I have to work around Paired Gastric Cancer Tumour and Normal RNA-Seq data libraries. I am looking for anys suggestions on what can I do as part of my project. ...
rna-seq written 9 weeks ago by mandhirsikander0 • updated 16 days ago by Biostar ♦♦ 20
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How do I perform MSI detection on fastq format libraries?
... I am a bachelor's student with a beginner level experience in Bioinformatics. As part of my B-tech project I have to detect Microsatellite Instabilty in Gastric Cancer libraries with Paired Normal and tumour sequences in fastq format. I have been reading about tools like MSISensor. Would really appr ...
next-gen cancer msi rna-seq sequencing written 3 months ago by mandhirsikander0

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