User: ml_researcher

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Posts by ml_researcher

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Comment: C: DESeq2 - Between sample normalization of train/test subsets
... Thank you for your answer. 3) Are there another between-sample normalization methods, which can allow me to fit a normalizer to the training set, and later I will be able to use it to normalize the test set? 2) I would like the absolute value to be comparable, i.e. if two samples have a given gene ...
written 21 months ago by ml_researcher20
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DESeq2 - Between sample normalization of train/test subsets
... Hello, I would like to apply machine learning methods on RNA-seq data from the TCGA dataset for the purpose of survival time analysis. The samples have to be comparable, so I understand I should use between-sample normalization methods like DESeq2. I would like to split my dataset to train/test su ...
normalization deseq2 rna-seq survival tcga written 21 months ago by ml_researcher20 • updated 21 months ago by Asaf8.5k

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