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6
votes
2
replies
4.4k
views
Answer:
Answer: Is it possible to extract the reference sequence from the BWA index files?
updated 2.4 years ago by
Ram
44k • written 8.8 years ago by
matted
7.8k
3
votes
0
replies
2.5k
views
Answer:
Answer: Significant of LASSO regression parameters
updated 2.4 years ago by
Ram
44k • written 8.8 years ago by
matted
7.8k
2
votes
0
replies
4.1k
views
Answer:
Answer: Ion Torrent sample data
updated 2.4 years ago by
Ram
44k • written 8.8 years ago by
matted
7.8k
0
votes
1
reply
5.6k
views
Comment:
C: Reading CRAM files in pysam
9.0 years ago by
matted
7.8k
1
vote
1
reply
2.1k
views
Comment:
C: Is a fully assembled 129S1/SvlmJ mouse strain available for download? If so wher
9.0 years ago by
matted
7.8k
0
votes
0
replies
3.4k
views
Comment:
Comment: DeepTools Error: Be sure that the bam files you are using is indexed.
updated 2.3 years ago by
Ram
44k • written 9.1 years ago by
matted
7.8k
3
votes
1
reply
3.4k
views
Answer:
Answer: DeepTools Error: Be sure that the bam files you are using is indexed.
updated 2.3 years ago by
Ram
44k • written 9.1 years ago by
matted
7.8k
0
votes
1
reply
3.6k
views
Comment:
C: Question on Smith-Waterman
9.1 years ago by
matted
7.8k
7
votes
2
replies
2.5k
views
Answer:
Answer: Publications with poor sequencing data
updated 2.3 years ago by
Ram
44k • written 9.2 years ago by
matted
7.8k
0
votes
0
replies
3.4k
views
Answer:
Answer: Samtools view pipe and position
updated 2.2 years ago by
Ram
44k • written 9.2 years ago by
matted
7.8k
0
votes
0
replies
2.6k
views
Comment:
Comment: Why is the scaling factor always million while dealing with RNA-Seq expression?
updated 2.2 years ago by
Ram
44k • written 9.2 years ago by
matted
7.8k
3
votes
2
replies
4.7k
views
Answer:
Answer: what is the fastest way to sort big bam files? (300Gb)
updated 2.2 years ago by
Ram
44k • written 9.2 years ago by
matted
7.8k
0
votes
0
replies
10k
views
Answer:
Answer: What means Gaussian Kernel?
updated 2.2 years ago by
Ram
44k • written 9.3 years ago by
matted
7.8k
3
votes
1
reply
4.6k
views
Comment:
Comment: fastq to fasta perl
updated 2.8 years ago by
Ram
44k • written 9.4 years ago by
matted
7.8k
1
vote
0
replies
3.8k
views
Comment:
Comment: Is it possible to guess sequencing platform used based on a FASTQ/BAM file?
updated 24 months ago by
Ram
44k • written 9.5 years ago by
matted
7.8k
1
vote
0
replies
9.5k
views
Comment:
C: comparing two fastq files
9.5 years ago by
matted
7.8k
1
vote
2
replies
17k
views
Comment:
Comment: Subsample BAM to fixed number of alignments
updated 23 months ago by
Ram
44k • written 9.5 years ago by
matted
7.8k
2
votes
2
replies
4.2k
views
Answer:
Answer: BWA-mem read mapping depends on chromosome order
updated 23 months ago by
Ram
44k • written 9.5 years ago by
matted
7.8k
0
votes
1
reply
17k
views
Comment:
Comment: Subsample BAM to fixed number of alignments
updated 23 months ago by
Ram
44k • written 9.5 years ago by
matted
7.8k
5
votes
1
reply
17k
views
Answer:
Answer: Subsample BAM to fixed number of alignments
updated 23 months ago by
Ram
44k • written 9.5 years ago by
matted
7.8k
2
votes
0
replies
3.4k
views
Answer:
A: Why does BWA give different Mapping Quality to identical reads?
9.6 years ago by
matted
7.8k
1
vote
0
replies
6.3k
views
Answer:
Answer: Docker - one image to rule them all?
updated 2.4 years ago by
Ram
44k • written 9.6 years ago by
matted
7.8k
0
votes
0
replies
3.9k
views
Comment:
Comment: How to calculate the joint entropy H(X,Y,Z) where X, Y, Z are position of MSA
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
matted
7.8k
0
votes
0
replies
1.9k
views
Comment:
Comment: MultiGPS replicate count
updated 2.5 years ago by
Ram
44k • written 9.7 years ago by
matted
7.8k
3
votes
0
replies
11k
views
Answer:
Answer: How can I shuffle a set of sequences while preserving the dinucleotide distribut
updated 2.6 years ago by
Ram
44k • written 9.7 years ago by
matted
7.8k
2
votes
1
reply
10k
views
Answer:
Answer: ALL RNA-seq publicly available data
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
matted
7.8k
3
votes
2
replies
6.6k
views
Answer:
Answer: Indexing reference genome for GATK
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
matted
7.8k
0
votes
1
reply
7.8k
views
Answer:
Answer: error using biocLite: not found
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
matted
7.8k
1
vote
1
reply
4.3k
views
Answer:
Answer: Bulk Segregant Analysis using next generation sequencing data
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
matted
7.8k
1
vote
0
replies
6.1k
views
Comment:
Comment: Keeping paired reads together when sorting BAM file by name
updated 2.7 years ago by
Ram
44k • written 9.8 years ago by
matted
7.8k
2
votes
1
reply
2.5k
views
Answer:
Answer: Discrepancies in Bam Read Lengths
updated 2.7 years ago by
Ram
44k • written 9.8 years ago by
matted
7.8k
0
votes
1
reply
6.1k
views
Answer:
Answer: Keeping paired reads together when sorting BAM file by name
updated 2.7 years ago by
Ram
44k • written 9.8 years ago by
matted
7.8k
0
votes
0
replies
2.3k
views
Answer:
Answer: SRA file looks wierd after conversion to fastq
updated 2.7 years ago by
Ram
44k • written 9.9 years ago by
matted
7.8k
1
vote
0
replies
4.2k
views
Answer:
Answer: How to separate plastid, mitochondrial, and nuclear genomes from whole genome se
updated 2.7 years ago by
Ram
44k • written 9.9 years ago by
matted
7.8k
0
votes
0
replies
2.8k
views
Answer:
Answer: evaluate RNA extraction based on sequencing
updated 2.7 years ago by
Ram
44k • written 9.9 years ago by
matted
7.8k
1
vote
0
replies
3.2k
views
Answer:
Answer: Help with BioPython manual example
updated 2.7 years ago by
Ram
44k • written 9.9 years ago by
matted
7.8k
0
votes
0
replies
4.3k
views
Comment:
Comment: I have demultiplexed files for a single biological replicate. When to combine th
updated 2.7 years ago by
Ram
44k • written 9.9 years ago by
matted
7.8k
1
vote
0
replies
3.9k
views
Answer:
Answer: How to align, filter, and call TruSeq Custom Amplicon data?
updated 2.7 years ago by
Ram
44k • written 9.9 years ago by
matted
7.8k
2
votes
1
reply
4.3k
views
Answer:
Answer: I have demultiplexed files for a single biological replicate. When to combine th
updated 2.7 years ago by
Ram
44k • written 9.9 years ago by
matted
7.8k
0
votes
0
replies
15k
views
Comment:
Comment: ChIP-Seq: Calling peaks with replicates
updated 2.9 years ago by
Ram
44k • written 10.1 years ago by
matted
7.8k
3
votes
1
reply
2.9k
views
Answer:
Answer: Author affiliation and for-profit licensing of published software
updated 2.9 years ago by
Ram
44k • written 10.2 years ago by
matted
7.8k
0
votes
1
reply
4.0k
views
Comment:
C: Analyzing genome wide sequencing data for control and experimental groups with b
10.2 years ago by
matted
7.8k
1
vote
0
replies
4.9k
views
Comment:
Comment: What's the real difference between these two types of methods for assessing diff
updated 2.9 years ago by
Ram
44k • written 10.2 years ago by
matted
7.8k
2
votes
1
reply
4.9k
views
Comment:
Comment: What's the real difference between these two types of methods for assessing diff
updated 2.9 years ago by
Ram
44k • written 10.2 years ago by
matted
7.8k
0
votes
0
replies
5.2k
views
Comment:
Comment: Rfam v12 -New released- Doubts- How do you face it?
updated 2.9 years ago by
Ram
44k • written 10.2 years ago by
matted
7.8k
1
vote
1
reply
6.1k
views
Comment:
Comment: Pair-end reads are merged into single file: need to separate
updated 2.9 years ago by
Ram
44k • written 10.2 years ago by
matted
7.8k
2
votes
3
replies
15k
views
Answer:
Answer: ChIP-Seq: Calling peaks with replicates
updated 2.9 years ago by
Ram
44k • written 10.2 years ago by
matted
7.8k
4
votes
1
reply
6.1k
views
Comment:
Comment: Create smaller bam file based on the list of sequences
updated 3.0 years ago by
Ram
44k • written 10.3 years ago by
matted
7.8k
1
vote
1
reply
6.1k
views
Answer:
Answer: Create smaller bam file based on the list of sequences
updated 3.0 years ago by
Ram
44k • written 10.3 years ago by
matted
7.8k
1
vote
0
replies
8.4k
views
Comment:
C: How to reduce reads in fastq, bam, bad files in a random manner?
10.3 years ago by
matted
7.8k
333 results • Page
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