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15
votes
2
replies
31k
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Answer: A: Count Of Variants
updated 3.8 years ago by 43k • written 11.7 years ago by 7.8k
4
votes
1
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9.8k
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Answer: A: Should I use MiSeq or HiSeq to generate data for assembling the blowfly genome?
updated 4.3 years ago by 43k • written 9.9 years ago by 7.8k
0
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0
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1.5k
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Answer: A: How to I obtain all genotype calls from 1 specific hapmap individual like NA1289
updated 4.3 years ago by 43k • written 9.9 years ago by 7.8k
2
votes
1
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3.3k
views
Answer: A: Could you explain the percentage of A, C , G, T in hg19 ?
updated 4.3 years ago by 43k • written 8.3 years ago by 7.8k
6
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0
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9.0k
views
Answer: A: Statistical analysis mutliple groups of RNA Seq data
updated 4.3 years ago by 43k • written 10.0 years ago by 7.8k
3
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1
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7.6k
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Answer: A: Where can i find some bacterial RNA-Seq data?
updated 4.3 years ago by 43k • written 10.0 years ago by 7.8k
1
vote
0
replies
3.9k
views
Answer: A: Buying computational resources vs. renting allocation on cluster
updated 4.3 years ago by 43k • written 8.3 years ago by 7.8k
1
vote
2
replies
12k
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Answer: A: Match And Merge Information By Id In Two Files
updated 4.3 years ago by 43k • written 10.3 years ago by 7.8k
1
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1
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3.6k
views
Answer: A: Looking for ways to download ChIP-seq datasets programmatically in a pipeline
updated 4.3 years ago by 43k • written 8.3 years ago by 7.8k
2
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0
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16k
views
Answer: A: How do I explain to my non-bioinformatician labmates how to interpret principal
updated 4.3 years ago by 43k • written 8.3 years ago by 7.8k
31
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4
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35k
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Answer: A: Remove mitochondrial reads from BAM files
updated 4.4 years ago by 43k • written 9.2 years ago by 7.8k
1
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1
reply
5.1k
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Answer: A: Reading CRAM files in pysam
updated 4.4 years ago by 43k • written 8.4 years ago by 7.8k
0
votes
2
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4.2k
views
Answer: A: SeqIO.write() in biopython is extremely slow
updated 4.4 years ago by 43k • written 8.4 years ago by 7.8k
3
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1
reply
3.2k
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Answer: A: Statistical Significance of Hidden Markov Models
updated 4.4 years ago by 43k • written 8.4 years ago by 7.8k
2
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1
reply
3.2k
views
Answer: A: Question on Smith-Waterman
updated 4.4 years ago by 43k • written 8.5 years ago by 7.8k
5
votes
0
replies
9.4k
views
Answer: Answer: How to get only rows with values in at least 3 columns?
updated 20 months ago by 43k • written 8.5 years ago by 7.8k
2
votes
1
reply
2.5k
views
Answer: A: Turning off revolvermaps
updated 4.4 years ago by 43k • written 8.5 years ago by 7.8k
0
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0
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2.7k
views
Answer: A: samtools view with specified regions, different output with and without -F 4
updated 4.4 years ago by 43k • written 8.5 years ago by 7.8k
1
vote
1
reply
4.4k
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Answer: A: Publicly available Rna-Seq count data
updated 4.5 years ago by 43k • written 8.9 years ago by 7.8k
3
votes
2
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2.6k
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Answer: A: BWA optional fields not outputted in the final BAM/SAM
updated 4.5 years ago by 43k • written 9.7 years ago by 7.8k
5
votes
1
reply
4.4k
views
Answer: A: Processed RNA-SEQ Datasets
updated 4.5 years ago by 43k • written 9.9 years ago by 7.8k
1
vote
1
reply
9.2k
views
Answer: A: Most effective way to merge individual VCF files into VCF files merged by chromo
updated 4.5 years ago by 43k • written 9.9 years ago by 7.8k
4
votes
0
replies
2.2k
views
Answer: A: What Ever Happened To Alignment Servers?
updated 4.5 years ago by 43k • written 10.7 years ago by 7.8k
4
votes
0
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6.7k
views
Answer: A: Can You Make A Bam File Picard Compatible? I Forgot -M With Bwa Mem
updated 4.5 years ago by 43k • written 10.8 years ago by 7.8k
15
votes
1
reply
8.2k
views
Answer: A: How Fundamental Is The 4 Gb Size Limit For Building Burrows-Wheeler Indices
updated 4.5 years ago by 43k • written 11.6 years ago by 7.8k
4
votes
0
replies
1.7k
views
Answer: A: Question on alignment
updated 5.6 years ago by 43k • written 8.2 years ago by 7.8k
2
votes
1
reply
2.2k
views
Answer: A: What kind of systematic bias of sequencing data the following normalization proc
updated 5.6 years ago by 43k • written 8.2 years ago by 7.8k
0
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1
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1.8k
views
Answer: A: What are some of the state of the art approaches for prediction of origins of re
updated 5.6 years ago by 43k • written 8.2 years ago by 7.8k
3
votes
0
replies
18k
views
Answer: A: How to tell bloodtype from SNPs data?
7.8 years ago by matted 7.8k
3
votes
1
reply
9.1k
views
Answer: A: FASTA file of fixed length
8.1 years ago by matted 7.8k
6
votes
2
replies
3.9k
views
Answer: Answer: Is it possible to extract the reference sequence from the BWA index files?
updated 21 months ago by 43k • written 8.2 years ago by 7.8k
3
votes
0
replies
2.3k
views
Answer: Answer: Significant of LASSO regression parameters
updated 21 months ago by 43k • written 8.2 years ago by 7.8k
2
votes
0
replies
3.9k
views
Answer: Answer: Ion Torrent sample data
updated 21 months ago by 43k • written 8.2 years ago by 7.8k
3
votes
1
reply
3.2k
views
Answer: Answer: DeepTools Error: Be sure that the bam files you are using is indexed.
updated 20 months ago by 43k • written 8.5 years ago by 7.8k
7
votes
2
replies
2.2k
views
Answer: Answer: Publications with poor sequencing data
updated 19 months ago by 43k • written 8.6 years ago by 7.8k
0
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0
replies
3.3k
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Answer: Answer: Samtools view pipe and position
updated 19 months ago by 43k • written 8.6 years ago by 7.8k
3
votes
2
replies
4.5k
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Answer: Answer: what is the fastest way to sort big bam files? (300Gb)
updated 19 months ago by 43k • written 8.6 years ago by 7.8k
0
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0
replies
9.3k
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Answer: Answer: What means Gaussian Kernel?
updated 18 months ago by 43k • written 8.7 years ago by 7.8k
2
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2
replies
3.8k
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Answer: Answer: BWA-mem read mapping depends on chromosome order
updated 16 months ago by 43k • written 8.9 years ago by 7.8k
5
votes
1
reply
15k
views
Answer: Answer: Subsample BAM to fixed number of alignments
updated 16 months ago by 43k • written 8.9 years ago by 7.8k
2
votes
0
replies
3.2k
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Answer: A: Why does BWA give different Mapping Quality to identical reads?
9.0 years ago by matted 7.8k
1
vote
0
replies
5.9k
views
Answer: Answer: Docker - one image to rule them all?
updated 21 months ago by 43k • written 9.0 years ago by 7.8k
3
votes
0
replies
10k
views
Answer: Answer: How can I shuffle a set of sequences while preserving the dinucleotide distribut
updated 23 months ago by 43k • written 9.1 years ago by 7.8k
2
votes
1
reply
9.9k
views
Answer: Answer: ALL RNA-seq publicly available data
updated 24 months ago by 43k • written 9.2 years ago by 7.8k
3
votes
2
replies
6.2k
views
Answer: Answer: Indexing reference genome for GATK
updated 24 months ago by 43k • written 9.2 years ago by 7.8k
0
votes
1
reply
7.6k
views
Answer: Answer: error using biocLite: not found
updated 24 months ago by 43k • written 9.2 years ago by 7.8k
1
vote
1
reply
4.1k
views
Answer: Answer: Bulk Segregant Analysis using next generation sequencing data
updated 2.0 years ago by 43k • written 9.2 years ago by 7.8k
2
votes
1
reply
2.3k
views
Answer: Answer: Discrepancies in Bam Read Lengths
updated 2.0 years ago by 43k • written 9.2 years ago by 7.8k
0
votes
1
reply
5.6k
views
Answer: Answer: Keeping paired reads together when sorting BAM file by name
updated 2.0 years ago by 43k • written 9.2 years ago by 7.8k
0
votes
0
replies
2.2k
views
Answer: Answer: SRA file looks wierd after conversion to fastq
updated 2.0 years ago by 43k • written 9.2 years ago by 7.8k
165 results • Page 1 of 4
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