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6
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1
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3.2k
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Answer: Answer: Is it possible to extract the reference sequence from the BWA index files?
updated 10 months ago by 39k • written 7.3 years ago by 7.7k
3
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0
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Answer: Answer: Significant of LASSO regression parameters
updated 10 months ago by 39k • written 7.3 years ago by 7.7k
2
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0
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3.5k
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Answer: Answer: Ion Torrent sample data
updated 10 months ago by 39k • written 7.3 years ago by 7.7k
0
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1
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4.3k
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Comment: C: Reading CRAM files in pysam
7.4 years ago by matted 7.7k
1
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1
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1.7k
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Comment: C: Is a fully assembled 129S1/SvlmJ mouse strain available for download? If so wher
7.5 years ago by matted 7.7k
0
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0
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2.9k
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Comment: Comment: DeepTools Error: Be sure that the bam files you are using is indexed.
updated 9 months ago by 39k • written 7.6 years ago by 7.7k
3
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1
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2.9k
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Answer: Answer: DeepTools Error: Be sure that the bam files you are using is indexed.
updated 9 months ago by 39k • written 7.6 years ago by 7.7k
0
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1
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2.6k
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Comment: C: Question on Smith-Waterman
7.6 years ago by matted 7.7k
7
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2
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1.7k
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Answer: Answer: Publications with poor sequencing data
updated 8 months ago by 39k • written 7.7 years ago by 7.7k
0
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0
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3.1k
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Answer: Answer: Samtools view pipe and position
updated 8 months ago by 39k • written 7.7 years ago by 7.7k
0
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0
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2.1k
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Comment: Comment: Why is the scaling factor always million while dealing with RNA-Seq expression?
updated 8 months ago by 39k • written 7.7 years ago by 7.7k
3
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2
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4.2k
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Answer: Answer: what is the fastest way to sort big bam files? (300Gb)
updated 8 months ago by 39k • written 7.7 years ago by 7.7k
0
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0
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8.6k
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Answer: Answer: What means Gaussian Kernel?
updated 7 months ago by 39k • written 7.8 years ago by 7.7k
3
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1
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3.8k
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Comment: Comment: fastq to fasta perl
updated 15 months ago by 39k • written 7.9 years ago by 7.7k
1
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0
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3.2k
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Comment: Comment: Is it possible to guess sequencing platform used based on a FASTQ/BAM file?
updated 5 months ago by 39k • written 7.9 years ago by 7.7k
1
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0
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8.5k
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Comment: C: comparing two fastq files
7.9 years ago by matted 7.7k
1
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2
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13k
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Comment: Comment: Subsample BAM to fixed number of alignments
updated 5 months ago by 39k • written 8.0 years ago by 7.7k
2
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2
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3.3k
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Answer: Answer: BWA-mem read mapping depends on chromosome order
updated 5 months ago by 39k • written 8.0 years ago by 7.7k
0
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1
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13k
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Comment: Comment: Subsample BAM to fixed number of alignments
updated 5 months ago by 39k • written 8.0 years ago by 7.7k
4
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1
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13k
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Answer: Answer: Subsample BAM to fixed number of alignments
updated 5 months ago by 39k • written 8.0 years ago by 7.7k
2
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0
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2.9k
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Answer: A: Why does BWA give different Mapping Quality to identical reads?
8.0 years ago by matted 7.7k
1
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0
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5.3k
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Answer: Answer: Docker - one image to rule them all?
updated 10 months ago by 39k • written 8.1 years ago by 7.7k
0
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0
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3.5k
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Comment: Comment: How to calculate the joint entropy H(X,Y,Z) where X, Y, Z are position of MSA
updated 11 months ago by 39k • written 8.1 years ago by 7.7k
0
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0
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1.6k
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Comment: Comment: MultiGPS replicate count
updated 12 months ago by 39k • written 8.2 years ago by 7.7k
3
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0
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9.5k
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Answer: Answer: How can I shuffle a set of sequences while preserving the dinucleotide distribut
updated 12 months ago by 39k • written 8.2 years ago by 7.7k
2
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1
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9.5k
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Answer: Answer: ALL RNA-seq publicly available data
updated 13 months ago by 39k • written 8.3 years ago by 7.7k
3
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2
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5.5k
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Answer: Answer: Indexing reference genome for GATK
updated 13 months ago by 39k • written 8.3 years ago by 7.7k
0
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1
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7.3k
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Answer: Answer: error using biocLite: not found
updated 13 months ago by 39k • written 8.3 years ago by 7.7k
1
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1
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3.8k
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Answer: Answer: Bulk Segregant Analysis using next generation sequencing data
updated 13 months ago by 39k • written 8.3 years ago by 7.7k
1
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0
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4.8k
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Comment: Comment: Keeping paired reads together when sorting BAM file by name
updated 13 months ago by 39k • written 8.3 years ago by 7.7k
2
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1
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2.0k
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Answer: Answer: Discrepancies in Bam Read Lengths
updated 13 months ago by 39k • written 8.3 years ago by 7.7k
0
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1
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4.8k
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Answer: Answer: Keeping paired reads together when sorting BAM file by name
updated 13 months ago by 39k • written 8.3 years ago by 7.7k
0
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0
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2.0k
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Answer: Answer: SRA file looks wierd after conversion to fastq
updated 13 months ago by 39k • written 8.3 years ago by 7.7k
1
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0
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3.7k
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Answer: Answer: How to separate plastid, mitochondrial, and nuclear genomes from whole genome se
updated 13 months ago by 39k • written 8.3 years ago by 7.7k
0
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0
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2.1k
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Answer: Answer: evaluate RNA extraction based on sequencing
updated 14 months ago by 39k • written 8.4 years ago by 7.7k
1
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0
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2.7k
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Answer: Answer: Help with BioPython manual example
updated 14 months ago by 39k • written 8.4 years ago by 7.7k
0
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0
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4.0k
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Comment: Comment: I have demultiplexed files for a single biological replicate. When to combine th
updated 14 months ago by 39k • written 8.4 years ago by 7.7k
1
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0
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3.6k
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Answer: Answer: How to align, filter, and call TruSeq Custom Amplicon data?
updated 14 months ago by 39k • written 8.4 years ago by 7.7k
2
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1
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4.0k
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Answer: Answer: I have demultiplexed files for a single biological replicate. When to combine th
updated 14 months ago by 39k • written 8.4 years ago by 7.7k
0
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0
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13k
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Comment: Comment: ChIP-Seq: Calling peaks with replicates
updated 17 months ago by 39k • written 8.6 years ago by 7.7k
3
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1
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2.5k
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Answer: Answer: Author affiliation and for-profit licensing of published software
updated 16 months ago by 39k • written 8.7 years ago by 7.7k
0
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1
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3.6k
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Comment: C: Analyzing genome wide sequencing data for control and experimental groups with b
8.7 years ago by matted 7.7k
1
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0
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4.3k
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Comment: Comment: What's the real difference between these two types of methods for assessing diff
updated 16 months ago by 39k • written 8.7 years ago by 7.7k
2
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1
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4.3k
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Comment: Comment: What's the real difference between these two types of methods for assessing diff
updated 16 months ago by 39k • written 8.7 years ago by 7.7k
0
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0
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4.7k
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Comment: Comment: Rfam v12 -New released- Doubts- How do you face it?
updated 16 months ago by 39k • written 8.7 years ago by 7.7k
1
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1
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5.7k
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Comment: Comment: Pair-end reads are merged into single file: need to separate
updated 16 months ago by 39k • written 8.7 years ago by 7.7k
2
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3
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13k
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Answer: Answer: ChIP-Seq: Calling peaks with replicates
updated 17 months ago by 39k • written 8.7 years ago by 7.7k
4
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1
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4.6k
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Comment: Comment: Create smaller bam file based on the list of sequences
updated 17 months ago by 39k • written 8.8 years ago by 7.7k
1
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1
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4.6k
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Answer: Answer: Create smaller bam file based on the list of sequences
updated 17 months ago by 39k • written 8.8 years ago by 7.7k
1
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0
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7.2k
views
Comment: C: How to reduce reads in fastq, bam, bad files in a random manner?
8.8 years ago by matted 7.7k
333 results • Page 2 of 7
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