User: rajpal22288

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rajpal2228850
Reputation:
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Location:
Germany
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PalRup
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Last seen:
5 months ago
Joined:
1 year, 8 months ago
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Posts by rajpal22288

<prev • 21 results • page 1 of 3 • next >
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Comment: C: FeatureCounts output does not contain all the genes in the annotation file
... Can you also post the snapshot of the gtf file? ...
written 5 months ago by rajpal2228850
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Answer: A: How to select multiple nodes with mouse - left click and drag
... Did you try selecting the nodes by holding "Ctrl" key? ...
written 5 months ago by rajpal2228850
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Comment: C: WGCNA "trait" file format?
... seems like its a common problem. I found the same problem in a Chinese website Which I translated to English. https://www.omicsclass.com/question/2568 ...
written 6 months ago by rajpal2228850
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Comment: C: WGCNA "trait" file format?
... Still the same error :( ...
written 6 months ago by rajpal2228850
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Comment: C: WGCNA "trait" file format?
... It worked. but I was not sure if the results are correct. I am getting an error while generating the heatmap, so I was not confident. labeledHeatmap(Matrix = moduleTraitCor, xLabels = names(datTraits), yLabels = names(MEs), ySymbols = nam ...
written 6 months ago by rajpal2228850
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WGCNA "trait" file format?
... I am trying to create co-expression network between lncRNA and RNA but I am not sure if the "trait" file I have made is correct. I have 14 samples with two conditions "Nodules" and "ctrl". Is this format right? Client group X3 1 X4 1 X5 1 X6 1 X8 1 X9 1 X10 1 X11 ...
gene R rna-seq sequencing written 6 months ago by rajpal2228850 • updated 6 weeks ago by Prakash2.0k
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Comment: C: NOISeq Fold Change calculation seems off?
... Also be careful with the sample names. Double check if the samples names correspond to the group you have assigned. ...
written 10 months ago by rajpal2228850
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Answer: A: NOISeq Fold Change calculation seems off?
... While calculating it considers the alphabetical order of the group you have defined, so, in your case it will calculate Control vs Treated, Change the names and you are good to go!! ...
written 11 months ago by rajpal2228850
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Which counts are to be considered when using Noiseq?
... I am performing normalization using Noiseq, but I am not sure which counts to use. I performed normalization using HTSeq counts and from Kallisto counts and the results seem to be different. When I compared the results, some of the genes seem to be fine but for most of the genes, fold change and pro ...
rna-seq sequencing written 11 months ago by rajpal2228850
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Comment: C: EnhancedVolcano plot error: Log2foldchange is not numeric!
... Are you sure the table is in **"x"** ?? Because earlier you stored it in res!! EnhancedVolcano(x, lab = rownames(x), x = "Cluster 1 Log2 fold change", y = "Cluster 1 Adjusted pvalue", It should be EnhancedVolcano(res, lab = rownames(x), x = "Cluster.1.Log2.fold.change", y = "Cluster.1.Ad ...
written 12 months ago by rajpal2228850 • updated 12 months ago by RamRS30k

Latest awards to rajpal22288

Popular Question 6 months ago, created a question with more than 1,000 views. For UMI Tools Dedup
Scholar 12 months ago, created an answer that has been accepted. For C: Unable to convert txt to gtf format

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