User: rajpal22288

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Posts by rajpal22288

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Comment: C: UMI Tools Dedup
... My sequences are not from a single cell, so i guess i have stick with either umi or picard. I have tried running samples without --output-stats but it appears to be the same problem. The --method-unique works for me. I have observed that the UMI's have been removed but i am not sure how to see the ...
written 6 months ago by rajpal222880 • updated 6 months ago by genomax71k
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Comment: C: UMI Tools Dedup
... I have added the link where many people have reported the same issue. ...
written 6 months ago by rajpal222880
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UMI Tools Dedup
... I am using dedup fucntion in UMI tools but still there seems to be an issue of excessive memory usage while the output is being generated. Kindly let me know if there's an alternative tool/ way to remove the remove the duplicates and count the UMI's. https://github.com/CGATOxford/UMI-tools/issues/1 ...
bioinformatics next-gen umitools rna-seq written 6 months ago by rajpal222880 • updated 12 weeks ago by viktorcheberachko0

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