User: bayoteju

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bayoteju10
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Posts by bayoteju

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Extracting MAF for a list of SNPs
... I have a list of SNPs (about 2000) for which I need their minor allele frequency for EUR. The minor allele frequency is available on dbSNP. How do I automate the extraction of MAF for my SNPs? Doing it one by one would take ages!! Any suggestions? ...
snp written 8 days ago by bayoteju10 • updated 8 days ago by mariamcurbelo20610
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Window for calculating proxy
... Hi all. I am trying to calculate LD in order to select proxy SNPs from 1000genomes for a group of SNPs. I wonder what window I should select. Does anyone have idea? Thank you. ...
snp written 24 days ago by bayoteju10
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Comment: A: Proxy SNPs from 1000 genome phase3
... Thank you very much. I am using snpStat to calculate the LDs. ...
written 7 weeks ago by bayoteju10
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Proxy SNPs from 1000 genome phase3
... I have a list of about 250 SNPs. I want to obtain the proxy SNPs for them using the 1000 genomes. I have downloaded corresponding .vcf and .ped files from 1000 genomes. I have also used PLINK to obtain the .bim, .fam and .bed files. How do I proceed to determine the proxy SNPs without using any sof ...
snp plink ld written 8 weeks ago by bayoteju10

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