User: eschang1

gravatar for eschang1
eschang110
Reputation:
10
Status:
New User
Location:
Last seen:
1 week ago
Joined:
1 month ago
Email:
e*******@gmail.com

Posts by eschang1

<prev • 6 results • page 1 of 1 • next >
0
votes
1
answer
98
views
1
answers
Comment: C: OMA Phase 2 stuck in "reading all vs. all" stage for 24 hours
... Hello Adrian, I let my most recent OMA run just get killed due to the walltime limit (24 hours) to see if the buffers would indeed be flushed, and it looks like it died while doing a bunch of additivity checks, i.e. `VP check additivity: daphnia_pulex/04002 vs hydra_magnipapillata/19500 by orbice ...
written 16 days ago by eschang110
0
votes
1
answer
98
views
1
answers
Comment: C: OMA Phase 2 stuck in "reading all vs. all" stage for 24 hours
... Thank you for the tip! ...
written 20 days ago by eschang110
1
vote
1
answer
98
views
1
answer
OMA Phase 2 stuck in "reading all vs. all" stage for 24 hours
... Hi there, I have just completed the all vs. all phase of the OMA standalone program with 42 metazoan genomes. I have tried to initiate the actual orthogroup inference phase but the program keeps getting stuck indefinitely on reading the all-vs. all results. I have double checked that each pair of ...
orthologs oma orthology written 20 days ago by eschang110 • updated 16 days ago by adrian.altenhoff520
0
votes
1
answer
92
views
1
answers
Comment: C: Correct formatting for IDs in OMA standalone .splice files to properly identify
... Realized I just responded to my own post: Okay great, this all in line with that I had gathered from the manual, but wanted to clarify before I started to put together those .splice files. Thanks so much! Cheers, Sally ...
written 26 days ago by eschang110
0
votes
1
answer
92
views
1
answers
Comment: A: Correct formatting for IDs in OMA standalone .splice files to properly identify
... Okay great, this all in line with that I had gathered from the manual, but wanted to clarify before I started to put together those .splice files. Thanks so much! Chers, Sally ...
written 4 weeks ago by eschang110
3
votes
1
answer
92
views
1
answer
Correct formatting for IDs in OMA standalone .splice files to properly identify splice variants
... I see that for the input .splice files, OMA standalone requires that the individual IDs are unique prefixes of your FASTA headers, and proteins that are splice variants of the same gene should be listed in the splice file like "ENSP00000384207; ENSP00000263741; ENSP00000353094". It looks like NCBI ...
orthologs oma orthology written 5 weeks ago by eschang110

Latest awards to eschang1

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1792 users visited in the last hour