User: amit15013

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amit150130
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Posts by amit15013

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Comment: C: GSVA Analysis Ouput Array gives lesser gene sets than original gene set array
... No i checked that. Max size is 93. ...
written 11 months ago by amit150130
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Comment: C: GSVA Analysis Ouput Array gives lesser gene sets than original gene set array
... can you please show your code. It would be really helpful ...
written 11 months ago by amit150130
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Comment: C: GSVA Analysis Ouput Array gives lesser gene sets than original gene set array
... Yes, our_genes prints the names of the pathways as well as the genes present in it. True, even though it has min.sz=0 it is returnig only 168 gene set and not 186. Thank you ...
written 11 months ago by amit150130
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Comment: C: GSVA Analysis Ouput Array gives lesser gene sets than original gene set array
... Hi This is the code i am using exprs <- as.matrix(read.table("~/velocyto/velocity_matrix_output.csv", header=TRUE, sep=",",row.names=1,as.is=TRUE)) gsva_set<- ExpressionSet(assayData=exprs) our_genes<-GSA.read.gmt("~/velocyto/c2.cp.kegg.v6.2.symbols.gmt") gsva_analysis < ...
written 11 months ago by amit150130 • updated 11 months ago by Kevin Blighe55k
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GSVA Analysis Ouput Array gives lesser gene sets than original gene set array
... Hi I am doing gsva analysis on pathways gene sets which consists of 186 gene set. When i run gsva analysis on my dataset it returns only 168 gene sets. How do i get to know which gene set has been returned as there is not naming in the final output array. Thank you ...
gsva written 11 months ago by amit150130

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