User: tongshiyuan

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Posts by tongshiyuan

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Comment: A: Graph Genome R&D Engineer at Seven Bridges, US or UK
... Hello, I use graph genome after fastq quality control, but something wrong with it: ~~~ 2020-03-14 13:49:03.052 ( 276.555s) [main thread ] global_search.hpp:145 0| } 0.000 s: Initialising execution context 0 for ggeco paired-end search terminate called after throwing an inst ...
written 10 months ago by tongshiyuan0
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How to annotate position with reference
... Hi, If I have a file like: CHR POS 1 10001 1 10002 1 10003 1 10004 1 10005 1 10006 ... How can I annotate it with reference? just like: 1 10001 A 1 10002 T 1 10003 C 1 10004 ...
annotate position dna written 20 months ago by tongshiyuan0 • updated 20 months ago by Pierre Lindenbaum133k
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GATK4: an error with VariantRecalibrator
... Hi, I use the VariantRecalibrator with GATK-4.0.10.1, and my sample is WGS data. I use CombineGVCFs with trio. it make an error: 18:19:38.004 WARN VariantDataManager - WARNING: Very large training set detected. Downsampling to 2500000 training variants. 18:19:38.150 INFO GaussianMixt ...
gatk4 variantrecalibrator written 22 months ago by tongshiyuan0 • updated 22 months ago by finswimmer14k

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