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Comment: Comment: ACMG assignment tools
13 months ago by Damianos P. Melidis ▴ 40
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How to map human variant to correspoding knock-allele in mouse
HMDC mouse MGI functional_assay knock-in
3.0 years ago by Damianos P. Melidis ▴ 40
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6.0k
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Answer: A: ACMG assignment tools
3.2 years ago by Damianos P. Melidis ▴ 40
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851
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Answer: A: Getting position of features of chromosomes
3.2 years ago by Damianos P. Melidis ▴ 40
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807
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Curated annotation files for human mutation hotspots
mutation hotspot annotation human
updated 3.3 years ago by 20 • written 3.3 years ago by ▴ 40
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2
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1.0k
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VEP coordinates do not result to same sequence as ref sequence in gsvar file
VEP pyensembl deletion GRCh37
3.4 years ago by Damianos P. Melidis ▴ 40
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Comment: A: VEP coordinates do not result to same sequence as ref sequence in gsvar file
3.4 years ago by Damianos P. Melidis ▴ 40
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678
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How to extract start codon position when start codon annotation does not exists
pyensembl start_codon coding_sequence GRCh37
3.4 years ago by Damianos P. Melidis ▴ 40
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1.5k
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Comment: C: Extracting FILTER field from gnomAD vcf file
3.5 years ago by Damianos P. Melidis ▴ 40
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2
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1.5k
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Extracting FILTER field from gnomAD vcf file
vcf PyVCF gnomAD
3.5 years ago by Damianos P. Melidis ▴ 40
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3.6k
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Answer: A: Find common entries between VCF and ClinVar VCF
3.6 years ago by Damianos P. Melidis ▴ 40
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3.0k
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Comment: C: How to use entrezpy and Biopython Entrez libraries to access ClinVar data from
3.7 years ago by Damianos P. Melidis ▴ 40
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3.0k
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Comment: C: How to use entrezpy and Biopython Entrez libraries to access ClinVar data from
3.7 years ago by Damianos P. Melidis ▴ 40
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Comment: C: How to use entrezpy and Biopython Entrez libraries to access ClinVar data from
3.7 years ago by Damianos P. Melidis ▴ 40
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6
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3.0k
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How to use entrezpy and Biopython Entrez libraries to access ClinVar data from genomic position of variant
entrezpy ClinVar Python3 BioPython Entrez
3.8 years ago by Damianos P. Melidis ▴ 40
3
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4
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1.0k
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How to select pairs to have a significant sample for similarity
similarity gene ontology sampling pairs
updated 4.4 years ago by 20 • written 4.5 years ago by ▴ 40
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1.0k
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Comment: C: How to select pairs to have a significant sample for similarity
4.5 years ago by Damianos P. Melidis ▴ 40
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671
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Does ParentChildTreeFile.txt of Interpro has a specific tree format?
interpro ParentChild tree_format
updated 4.6 years ago by 20 • written 4.6 years ago by ▴ 40
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661
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Retrieving similarity of Interpro domains
interpro meta-data
4.6 years ago by Damianos P. Melidis ▴ 40
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914
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Answer: A: Automatically retrieving interpro domain information ( to combine with phylogent
4.6 years ago by Damianos P. Melidis ▴ 40
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9.4k
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Comment: Comment: snpEFF chr not found error bacterial genome
updated 2.1 years ago by 43k • written 4.9 years ago by ▴ 40
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Calculate the SNP effect on binding site and RNA fold for Bacteria
SNP Bacteria RNA_fold binding_site
4.9 years ago by Damianos P. Melidis ▴ 40
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