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questions
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How to map human variant to correspoding knock-allele in mouse
HMDC
mouse
MGI
functional_assay
knock-in
3.0 years ago by
Damianos P. Melidis
▴ 40
0
votes
0
replies
793
views
Curated annotation files for human mutation hotspots
mutation
hotspot
annotation
human
updated 3.2 years ago by
Biostar
20 • written 3.2 years ago by
Damianos P. Melidis
▴ 40
3
votes
2
replies
995
views
VEP coordinates do not result to same sequence as ref sequence in gsvar file
VEP
pyensembl
deletion
GRCh37
3.3 years ago by
Damianos P. Melidis
▴ 40
0
votes
0
replies
662
views
How to extract start codon position when start codon annotation does not exists
pyensembl
start_codon
coding_sequence
GRCh37
3.3 years ago by
Damianos P. Melidis
▴ 40
2
votes
2
replies
1.5k
views
Extracting FILTER field from gnomAD vcf file
vcf
PyVCF
gnomAD
3.4 years ago by
Damianos P. Melidis
▴ 40
2
votes
6
replies
2.9k
views
How to use entrezpy and Biopython Entrez libraries to access ClinVar data from genomic position of variant
entrezpy
ClinVar
Python3
BioPython
Entrez
3.7 years ago by
Damianos P. Melidis
▴ 40
3
votes
4
replies
1.0k
views
How to select pairs to have a significant sample for similarity
similarity
gene ontology
sampling pairs
updated 4.4 years ago by
Biostar
20 • written 4.4 years ago by
Damianos P. Melidis
▴ 40
0
votes
0
replies
657
views
Does ParentChildTreeFile.txt of Interpro has a specific tree format?
interpro
ParentChild
tree_format
updated 4.5 years ago by
Biostar
20 • written 4.6 years ago by
Damianos P. Melidis
▴ 40
0
votes
0
replies
652
views
Retrieving similarity of Interpro domains
interpro
meta-data
4.5 years ago by
Damianos P. Melidis
▴ 40
0
votes
0
replies
612
views
Calculate the SNP effect on binding site and RNA fold for Bacteria
SNP
Bacteria
RNA_fold
binding_site
4.8 years ago by
Damianos P. Melidis
▴ 40
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