User: Beginner

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Beginner40
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Posts by Beginner

<prev • 16 results • page 2 of 2 • next >
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Comment: C: How to filter sequencing reads in a fastq file by size?
... WOW! This was incredible helpful! Thank you for this great explanation! ...
written 15 months ago by Beginner40
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Comment: C: How to filter sequencing reads in a fastq file by size?
... https://www.biostars.org/p/66996/ This one. Didn't try the biopieces option though due to issued I had with one requuired library. ...
written 15 months ago by Beginner40
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How to filter sequencing reads in a fastq file by size?
... How to filter sequencing reads in a fastq file by size? I want to filter a Ribo-Seq fastq file to only maintain sequences between 26 and 32 bp. The approaches I tried did all mess up the fastq line arrangement of the output fastq file. Also an old post that I found from 6 years ago did not help sinc ...
ribo-seq fastq size rna-seq filter written 15 months ago by Beginner40 • updated 15 months ago by emeline.a.favreau30
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Install Perl module without always included "Foo" language (for Biopieces)
... Hi, I tried to use "Biopieces" and followed the installation guide on the GitHub page. When I try to run it I get an error message that seems to have something to do with the perl module "Inline::C": On Biopieces GitHub page someone reported the same issue and an answer was: > "`Inline::C`, by ...
perl biopieces written 16 months ago by Beginner40 • updated 16 months ago by RamRS28k
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Comment: A: Can I simply rename a Illumina sequencing file (fastq format) that is named as .
... Thank you, your answers helped! ...
written 16 months ago by Beginner40
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Can I simply rename a Illumina sequencing file (fastq format) that is named as .txt to .fastq without having any problems?
... Hi, I am relatively new to the analysis of sequencing data. I got some sequencing data as a .txt file that seems to have the normal fastq format. Since fastq is a txt file, can I simply rename the files from "myData.txt" to "myData.fastq" or from "myData.txt.gz" to "myData.fastq.gz" without having ...
rna-seq sequencing written 16 months ago by Beginner40

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Teacher 11 months ago, created an answer with at least 3 up-votes. For C: Is it okay to use a ENSEMBL toplevel genome for mapping when no primary assembly

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