User: rezaeir75

gravatar for rezaeir75
rezaeir7510
Reputation:
10
Status:
New User
Location:
Last seen:
1 day, 7 hours ago
Joined:
1 year, 3 months ago
Email:
r********@gmail.com

Posts by rezaeir75

<prev • 7 results • page 1 of 1 • next >
0
votes
1
answer
109
views
1
answers
Comment: C: Is rsburead splice-aware? Should I use HISAT2, rsubread, or some other aligner?
... Thank you for your answer. I finally went with kallisto and pseudo-alignment approach. I'm learning to use your package for DTU. However, there is a problem. Maybe this is not the right place and I should ask another question. But anyway, the problem is that when I run importRdata() with the followi ...
written 4 days ago by rezaeir7510
0
votes
1
answer
109
views
1
answers
Comment: C: Is rsburead splice-aware? Should I use HISAT2, rsubread, or some other aligner?
... my primary objective is to find differentially expressed genes in tumor cells before and after treatment. but I also want to search for miRNA-mRNA regulatory networks as a secondary goal. ...
written 20 days ago by rezaeir7510
0
votes
1
answer
109
views
1
answer
Is rsburead splice-aware? Should I use HISAT2, rsubread, or some other aligner?
... - I'm currently learning different approaches for RNA-seq data QC, alignment, and analysis. However, I'm confused that which tool is best for alignment. Because I'm comfortable with R, I'd rather stay in R environment and use Rsubread but I want to be sure that I'm not sacrificing accuracy for ease. ...
R alignment rna-seq written 24 days ago by rezaeir7510 • updated 10 days ago by kristoffer.vittingseerup3.3k
0
votes
1
answer
110
views
1
answers
Comment: C: miRNA-mRNA correlation data analysis
... Thank you for your answer. I think my lack of knowledge about the overall process was the reason to look for a step by step tutorial. However, because I already know how to perform QC and alignment, I think your answer is a short useful tutorial for me!! Don't I need to do differential expression an ...
written 25 days ago by rezaeir7510
2
votes
1
answer
110
views
1
answer
miRNA-mRNA correlation data analysis
... I'm a wet lab Molecular Biologist who has experience with programming in Python and R, and I also know how to use bash. However, I'm a newbie in RNA seq data analysis, and I just read and coded through a few tutorials here and there. - Right now, I need to work on miRNA-mRNA negative correlation ...
mirna-mrna network rna-seq written 26 days ago by rezaeir7510 • updated 26 days ago by aboozar.soorni30
4
votes
0
answers
296
views
5 follow
0
answers
(Closed) Need Oligo6 software
... I need a download link or the files of Oligo6 software. I couldn't find it by searching their website or any other resources through Google and other search engines. If someone has this software, I would appreciate it if you could give me a download link. ...
gene sequence written 15 months ago by rezaeir7510
0
votes
0
answers
509
views
0
answers
Specify a blosum matrix in multiple sequence alignment using ClustalwCommandline
... I want to use a specific blosum matrix for doing multiple sequence alignment using biopython. There are several options for doing MSA in biopython, for example I used clustalw. However, if I want to use its pwmatrix option to specify a blosum matrix, there is no kwarg for doing so. There is only an ...
alignment written 15 months ago by rezaeir7510

Latest awards to rezaeir75

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1689 users visited in the last hour