User: oussriradnane

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Posts by oussriradnane

<prev • 19 results • page 1 of 2 • next >
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Generate SNP/indel annotation
... I have a .tab file with SNPs from a fungi genome and i want to find if the SNPs are located inside genes, are there any tools that I can use and give me the names of the genes that contains the snps ...
genome snp written 4 months ago by oussriradnane0
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Comment: C: determination of species level
... I am trying to confirm the results of a phylogenetic tree, for that I am looking for these parametric parameters (ani, ddh, gAni), I already did the same thing with prokaryotic genomes but for eukaryotic genomes it does not work, my question is what there are parameters for confirmed the results of ...
written 5 months ago by oussriradnane0
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determination of species level
... hi all are there any software or methods for calculating ANI (average nucleotide identity) and DDH (dna dna hybridization) and gANI values ​​for eukaryotic species ...
alignment ani ddh written 5 months ago by oussriradnane0
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Comment: C: mash configure error --with-gsl can not find gsl
... thank you michael.ante ...
written 5 months ago by oussriradnane0
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mash configure error --with-gsl can not find gsl
... Hi, could you help me with this? i want to instal the FastAni software I have installed the gsl library , and feed the path to --with-gsl , but it just not work: adnane@adnane-Presario-CQ56-Notebook-PC:~/Bureau/FastANI-master$ ./configure checking for g++... g++ checking whether t ...
software error written 5 months ago by oussriradnane0 • updated 5 months ago by genomax73k
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constuction of pan and accessory genomes
... Hello, Is there any software for construction of pan and accessory genomes? I'm working on eukaryotic genomes, I'm trying to make a genomic comparison between eukaryotic species ...
genome alignment written 5 months ago by oussriradnane0
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Comment: C: Whole genome alignments
... my strains have 4 chromosomes, can I compare chrormosome by chromosome or gather all genes (concatenated) in a sequence and deduce it as a single genome ...
written 6 months ago by oussriradnane0
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Comment: C: Whole genome alignments
... thank you ...
written 6 months ago by oussriradnane0
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Comment: C: Whole genome alignments
... I have 10 genomes , I want to make a comparative analysis of these genomes to determine the evolutionary relationship between the strains ...
written 6 months ago by oussriradnane0
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Comment: C: Whole genome alignments
... homology ...
written 6 months ago by oussriradnane0

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