User: heyang

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heyang0
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Posts by heyang

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Stringtie: use htseq-count or prepDE.py to extract reads?
... Hi All, I am currently working on downstream analysis of my RNAseq data. I have been using stringtie and its prepDE.py to extract the reads for DESeq2 for DE. Basically following http://ccb.jhu.edu/software/stringtie/index.shtml?t=manual. And also thinking of comparing DE with edgeR. I came across ...
stringtie deseq2 rna-seq edger written 5 months ago by heyang0 • updated 5 months ago by ATpoint24k
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Comment: C: WGNCA (correlation network): how can I incorporate mutant and wildtype into the
... Thanks for the advice, did change it. ...
written 6 months ago by heyang0
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WGNCA (correlation network): how can I incorporate mutant and wildtype into the same network analysis?
... Hello Everyone, I have RNAseq data set which I looked at the expression profile of a wild-type and gene knockout mutant at two pHs (7.4 and 5.0). I want to identify modules that are associated with pH and genetic background. So for the trait files, I used binary values (0,1) to indicate whether it ...
R rna-seq wgcna written 6 months ago by heyang0 • updated 6 months ago by Kevin Blighe49k

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