User: xxxxxxxx

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Posts by xxxxxxxx

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how GENIE3 package works?
... How exactly `GENIE3 package` of `R` works? how it calculate the weight and what is the exact logic and calculation takes place behind it? How it decide the `regulatoryGene` and `targetGene`? ...
gene R written 11 months ago by xxxxxxxx20
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Gene co-expression network construction
... My file is like this - TCGA-5557 TCGA-A6DD TCGA-A6DE TCGA-4227 HECW1 70 32 274 49 KMT2E 3344 1030 6263 2270 CACNA1G 274 23 28 3 USH1C 1 0 1 ...
gene R co-expression network written 11 months ago by xxxxxxxx20
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how to create a gene co-expression network?
... I have stagewise file of genes(early stage)- genename|EntrezGene|Startposition|Endposition|RefAllele|TumorSeqAllele|TumorSeqAllele2|sample ABAT 18 8873373 8873373 G G A TCGA- 6961 ABAT 18 8873373 8873373 G G A ...
gene R co-expression cytoscape written 11 months ago by xxxxxxxx20
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Find the combination of a perticular elements with its other column element
... My file is like this- Pcol Mcol P1 M1,M2,M5,M6 P2 M1,M2,M3,M5 P3 M4,M5,M7,M6 I want to find the combination of Mcol elements along with Pcol. Expected output- Pcol Mcol P1 M1,M2 P2 M1,M2 P1 M1,M5 ...
R written 13 months ago by xxxxxxxx20 • updated 13 months ago by zx87549.4k
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(Closed) Extract the columns containg file 1 element in file 2
... I have 2 files- File 1- MU1234 MU1522 MU1856 MU3615 File 2- MU1234 MU3615 MU1777 MU1522 MU1234 MU1856 1 0 1 1 1 1 0 0 1 1 0 1 0 1 1 1 0 1 1 1 1 1 1 1 0 1 ...
R command-line written 14 months ago by xxxxxxxx20
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(Closed) Count frequency of elements of one file in another file
... I have 2 file file 1- M1 M2 M1 M3 M3 M1 M3 M2 M4 M5 M7 M6 file 2- P1 M1,M2,M5,M6 P2 M1,M2,M3,M5 P3 M4,M5,M7,M6 I want to count the frequency of the file 1 pair of column 1 and column 2 in file 2. Expected output- M1 M2 2 M1 M3 1 M3 M1 1 ...
R .csv written 14 months ago by xxxxxxxx20
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What does corelation mutation matrix indicates?
... MU101188 MU101310 MU101326 MU1045462 MU101188 1 -0.006 -0.006 -0.006 MU101310 -0.006 1 -0.006 0.006 MU101326 -0.006 -0.006 1 -0.006 MU1045462 ...
R coorelation mutation written 14 months ago by xxxxxxxx20
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Arrange multiple column into a single column using R-language
... My data is like this having 180 columns(column length are different) and length of column is very long- 1828 79595 219479 90102 1009 5936 114882 57685 6621 80823 27102 160335 51599 118987 8912 5910 4012 How to convert/arrange thes ...
R csv written 15 months ago by xxxxxxxx20
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How to rank genes on the basis of degree in cytohubba in cytoscape
... How to rank genes present in a network on the basis of degree in CytoHubba in cytoscape? In ascending or descending order? ...
gene network cytoscape centrality written 15 months ago by xxxxxxxx20 • updated 14 months ago by Biostar ♦♦ 20
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Comment: C: Extract the match content and merge them
... Modified the Question please check ...
written 15 months ago by xxxxxxxx20

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Popular Question 8 months ago, created a question with more than 1,000 views. For Gene co-expression network construction
Popular Question 8 months ago, created a question with more than 1,000 views. For Extracting row and column names from matrix in R

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