User: haddadfatiha62

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Posts by haddadfatiha62

<prev • 15 results • page 1 of 2 • next >
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mgrast results:output files
... hello i analyse my data with mgrast , now i want use STAMP for statistical analysis but i didn't know how i can get the tsv file from mgrast can you help me plaise i'm new in this field ,thanks ...
next-gen sequence written 11 days ago by haddadfatiha620
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Metagenomic comparative analyses
... hello everybody i analyse tow samples with pipline mg rast , now i want compare between them but t don't know wich tool i will use.for the metagenomic comparative an other question how i can dwonload the tsv file from MG-Rast.? ...
sequence written 11 days ago by haddadfatiha620
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Comment: C: problem with SeqPrep
... My files is not compressed , it's fastq file i don't indrstand when i have problem ...
written 10 weeks ago by haddadfatiha620
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problem with SeqPrep
... Hi everybody I want to merge reads (reverse and forward) so i use seqPrep with this command : SeqPrep -f ERR770964_1.fastq -r /ERR770964_2.fastq -1 forward.fastq -2 reverse.fastq -s merged_file.fastq , i got this result Pairs Processed: 0 Pairs Merged: 1066735 Pairs W ...
sequence written 10 weeks ago by haddadfatiha620 • updated 22 days ago by h.mon27k
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assembly with metaspades
... HI everybody , i use trimmomatic for trimming my data (it's a shotgun metagenomic) i got 4 output , now i want use metaspades for assembling , so my question is about which output we should i use for asseemblage (paired or unpaired or both files ) ...
assembly written 12 weeks ago by haddadfatiha620
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Comment: C: the output of trimmomatic software
... Thanks to you genomax for your answer ...
written 3 months ago by haddadfatiha620
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the output of trimmomatic software
... hi everybody I use trimmomatic softwre for trimming and Iget 4output paired files(forward and reverse) unpaired (forward and reverse) i didn't inderstand the diffirence between the paired and unpaired files can you help me to inderstand please ...
next-gen written 3 months ago by haddadfatiha620
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(Closed) output of trimmomatic software
... hi everybody I use trimmomatic softwre for trimming and Iget 4output paired files(forward and reverse) unpaired (forward and reverse) i didn't inderstand the diffirence between the paired and unpaired files can you help me for inderstand please ...
software error written 3 months ago by haddadfatiha620
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Answer: A: using trimmomatic software
... yes you are right Ihave a problem in the path of the directory thanks you so much for your help ...
written 3 months ago by haddadfatiha620
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using trimmomatic software
... Hi I m begening at bioinformatic ,i want use trimmomatic for trimming my data , i install trimmomatic by conda , and i use this command trimmomatic PE -phred33 ERR770964_1.fastq ERR770964_2.fastq paired_1_R1_paired.fq.gz unpaired_1_R1_unpaired.fq.gz paired_1_R2_paired.fq.gz unpaired_1_R2_unpai ...
software error written 3 months ago by haddadfatiha620

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