User: iaagosch

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iaagosch0
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Posts by iaagosch

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Comment: C: fastx quality stats outputting .txt? files
... I agree, it shouldn't need the semicolons at the end. None of the examples I had on hand (PI's stuff/Colleagues scripts) had semicolons at the end of the code. They worked as planned when they were used, but when I adapted the scripts to my files, stuff just didn't work out. The code is eight li ...
written 4 weeks ago by iaagosch0
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Comment: C: fastx quality stats outputting .txt? files
... Going through books about Unix/Perl/Python, I noticed a lot of scripts had `;` to end a command and start another one in the line below, so I thought I could give it a shot. ...
written 4 weeks ago by iaagosch0
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Answer: C: fastx quality stats outputting .txt? files
... I added `;` to the end of every line and, apparently, fixed it. The scripts I had as examples did not have `;`. Did that a couple days ago and forgot to post here. Thanks for the help! :) ...
written 4 weeks ago by iaagosch0
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Comment: C: fastx quality stats outputting .txt? files
... Using Ubuntu 16.04.6. And I'll take a look at that ! Thanks :) ...
written 5 weeks ago by iaagosch0
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Comment: C: fastx quality stats outputting .txt? files
... Yes, I have typed the command manually. Still gives me the .txt? at the end. ...
written 5 weeks ago by iaagosch0
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Comment: C: fastx quality stats outputting .txt? files
... I adapted the script to the files that I have. I have a lot of samples, so renaming them to something else would make everything super confusing. ...
written 5 weeks ago by iaagosch0
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Comment: C: fastx quality stats outputting .txt? files
... Yes, it only happened with FastX quality stats ...
written 5 weeks ago by iaagosch0
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Comment: C: fastx quality stats outputting .txt? files
... yes. The results have a `?` in the file extension. The outputs are, for example `file.txt?` instead of `file.txt` The files are ok, but with the `?` I can't transfer the file to my computer (using FileZilla), and the .txt extensions work just fine to transfer. ...
written 5 weeks ago by iaagosch0
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fastx quality stats outputting .txt? files
... Hi! My first post here, so, sorry for the bad formatting. I had a bioinformatics subject a year ago and I'm getting into it again. I'm having some trouble going through fastx quality stats. I got an example from the classes I had, and the command line, was simple, I just want to output `.txt` ...
software error written 5 weeks ago by iaagosch0 • updated 5 weeks ago by RamRS21k

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