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Posts by zhu.ge
... Having some issue run hisat2. Keep getting error message. hisat2 -x ../yeast/yeast -U mini.fq -S mini.sam Could not locate a HISAT2 index corresponding to basename "../yeast/yeast" Error: Encountered internal HISAT2 exception (#1) Command: /usr/local/bin/hisat2-align-s --wrapper basic-0 -x ../ye ...
... I am trying to use hisat2_extract_splice_sites.py to make a list of splice sites with genome annotation file yeast.gtf. The output shows " Error: could not open hisat2_extract_splice_sites.py " and "Error: Encountered internal HISAT2 exception (#1)". Why can't I open the hisat2_extract_splice_sites. ...
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