User: JJK

gravatar for JJK
JJK50
Reputation:
50
Status:
New User
Location:
Netherlands
Last seen:
3 years, 8 months ago
Joined:
8 years, 1 month ago
Email:
j*************@gmail.com

about me

Posts by JJK

<prev • 6 results • page 1 of 1 • next >
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Order by subclass SPARQL
... I have seen some posts about using the uniprot and the spraql endpoint to retrieve either all species belonging to a rank or identify what the parent class is of a species. For example the following query will retrieve the lineage of a given organism PREFIX up:<http://purl.uniprot.org/core/> ...
rdf subclassof sparql written 4.9 years ago by JJK50 • updated 4.9 years ago by me690
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Visualizing metabolic models
... I have been working in the field of annotation and modeling for a while now but I never encountered a model viewer that roughly fits my needs and I am amazed that I can't find one.         I see a lot of people creating SBML files and I wanted to view them graphically in a web viewer of some so ...
models web view sbml written 4.9 years ago by JJK50
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Bacterial genome viewer Javascript JSON
... I stumbled across this post but as it was not completely answering my question I was wondering if others might know the answer if there is any... https://www.biostars.org/p/363/ What is a good web based application or code to create a linear + circular viewer which first of all can show simple anno ...
rnaseq annotation json viewer written 5.7 years ago by JJK50 • updated 5.7 years ago by Biostar ♦♦ 20
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Answer: A: Orthomcl Incompatibility With Mysql5.5.20
... If you still have issues with MySQL try the following in perl: system("mysqlimport -u USERNAME -pPASS orthomcl /pathto/SimilarSequences --local"); or from command line: mysqlimport -u USERNAME -pPASS orthomcl /pathto/SimilarSequences --local I am also creating an automated application where you ...
written 7.7 years ago by JJK50
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Comment: C: Retrieve Genbanks From Taxid
... I am able to get all taxonomy IDs from every species via your method indeed. But one species can consist of many strains and somehow I am unable to retrieve the data. ...
written 8.1 years ago by JJK50
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Retrieve Genbanks From Taxid
... I know the manual way of doing it but is there an automated way of retrieving all genbank files of all species belonging to a taxid like 51291? It should be something like first retrieve all taxonomy ids of the strains belonging to this superclass taxid and then find the genbank file belonging to t ...
taxonomy biopython genbank written 8.1 years ago by JJK50 • updated 8.1 years ago by Peter5.8k

Latest awards to JJK

Student 4.8 years ago, asked a question with at least 3 up-votes. For Order by subclass SPARQL
Popular Question 5.3 years ago, created a question with more than 1,000 views. For Retrieve Genbanks From Taxid

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