User: soobiney

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soobiney0
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Posts by soobiney

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What is the Ligand-RMSD meaning and calculation for peptide protein interaction?
... hello, I would like to know estimate the peptide binding site on the receptor. so i used the CABS-DOCK website, and I got the "Cluster name", "Cluster density," "Average RMSD (Å)", "Maximum RMSD within the Cluster (Å)", "Number of cluster elements" . In several papers, they says "Ligand-RMSD v ...
sequencing written 21 days ago by soobiney0
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is it okay to draw PIP interactions using down-regulated genes?,
... Hi, I got RNA seq data from the company. There are more down-regulated genes than up-regulated genes. I generally thought in the paper that I use a series of upregulated gene to draw a string network (PIP interaction). So is it okay to draw PIP interactions using down-regulated genes? Thank you ...
gene string rna-seq written 15 months ago by soobiney0
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How to identify the sequence in the receptor to which my peptide of interest bind to?
... Currently, I am analyzing peptide-receptor binding sites using CABS-DOCK program. I am wondering, how to identify the sequence in the receptor to which my peptide of interest bind to? If any other program that can detect that, I will appreciate if you let me know about. ...
peptide protein receptor docking written 19 months ago by soobiney0 • updated 18 months ago by Biostar ♦♦ 20
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I'm predicting the protein-peptide structure. Why is the result different everytime?
... Hi. I am a doctoral student. The binding structure is predicted using specific protein and peptide sequences. By the way, each time I do, I have to worry about how to interpret it because the result is different. The program used is the web-application [CABS-dock][1]. Put the PDB number (only the ...
sequence prediction protein peptide written 19 months ago by soobiney0 • updated 19 months ago by Michael Dondrup48k

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