User: Stemcellguy

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Posts by Stemcellguy

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Comment: C: Cellranger count argument for 10xgenomic RNA+surface protein
... 1- Yes, test run was successful. 2- I tried different --id, same result. It does't create any output. Please take a look at my directory (I created the pbmc1k_output before running the code): ls -1 path cellranger-3.0.2 pbmc_1k_protein_v3_fastqs pbmc1k_output ...
written 26 days ago by Stemcellguy 0
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Comment: C: Cellranger count argument for 10xgenomic RNA+surface protein
... It doesn't give errors but nothing happens and it takes me back to the command line. It only shows this: cellranger count (3.0.2) Copyright (c) 2019 10x Genomics, Inc. All rights reserved. ------------------------------------------------------------------------------- Usage: ...
written 26 days ago by Stemcellguy 0
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Comment: C: Cellranger count argument for 10xgenomic RNA+surface protein
... Yes, I didn't see any problem with my argument ...
written 27 days ago by Stemcellguy 0
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Cellranger count argument for 10xgenomic RNA+surface protein
... I can't get cellranger count work. Dataset from here: https://support.10xgenomics.com/single-cell-gene-expression/datasets/3.0.0/pbmc_1k_protein_v3. The datasets has two FASTQ files, one for RNA and another for surface protein. Here is what I did: 1- downloaded the FASTQ file, cellranger 3 and t ...
rna-seq written 27 days ago by Stemcellguy 0 • updated 8 days ago by swbarnes25.5k

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