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How to remove variants with 3+ alleles present Plink1.9
HaplotypeCaller GATK Plink1.9 vcftools
updated 4 weeks ago by • 0 • written 2.2 years ago by ▴ 10
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1.6k
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Query regarding Intervals and interval lists (-L) for Target Enrichment Sequencing GATK HaplotypeCaller
Agilent Interval_list HaplotypeCaller target_enrichment_list GATK
2.1 years ago by ramshahaya ▴ 10
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763
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Comment: Comment: identification of ROH using plink
2.1 years ago by ramshahaya ▴ 10
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0
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452
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Query reagrding Plink merging
vcf Plink1.9 GATK bcftools
updated 10 months ago by 43k • written 2.1 years ago by ▴ 10
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1.0k
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Comment: Comment: How to get information (Count) of Unique Mapped Reads to the Genome?
2.2 years ago by ramshahaya ▴ 10
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2.5k
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Comment: Comment: How to remove variants with 3+ alleles present Plink1.9
updated 2.2 years ago by 11k • written 2.2 years ago by ▴ 10
0
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1
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1.0k
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Comment: Comment: How to get information (Count) of Unique Mapped Reads to the Genome?
2.2 years ago by ramshahaya ▴ 10
0
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4
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1.0k
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How to get information (Count) of Unique Mapped Reads to the Genome?
samtools BWA
2.2 years ago by ramshahaya ▴ 10
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0
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479
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Understand Bedtools coverage output
Bedtools coverage
updated 10 months ago by 43k • written 2.2 years ago by ▴ 10
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0
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1.7k
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Comment: Comment: Haplotype Caller GATK Query
2.2 years ago by ramshahaya ▴ 10
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0
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1.7k
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Comment: Comment: Haplotype Caller GATK Query
2.2 years ago by ramshahaya ▴ 10
0
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1
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1.7k
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Comment: Comment: Haplotype Caller GATK Query
2.2 years ago by ramshahaya ▴ 10
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0
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1.1k
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Comment: Comment: targeted resequencing data analysis
2.2 years ago by ramshahaya ▴ 10
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2
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1.7k
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Comment: Comment: Haplotype Caller GATK Query
updated 2.2 years ago by 161k • written 2.2 years ago by ▴ 10
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9
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1.7k
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Haplotype Caller GATK Query
Sequencing enrichment Target GATK-Haplotype-Caller
2.2 years ago by ramshahaya ▴ 10
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0
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955
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Comment: Comment: SnpEff Query
2.2 years ago by ramshahaya ▴ 10
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1
reply
955
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Comment: Comment: SnpEff Query
2.3 years ago by ramshahaya ▴ 10
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4
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955
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SnpEff Query
snpeff GATK annotation
2.2 years ago by ramshahaya ▴ 10
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0
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3.4k
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Answer: A: Picard - MergeBamAlignment: Reads remaining on alignment iterator
3.4 years ago by ramshahaya ▴ 10
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