User: Maloki

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Maloki10
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Posts by Maloki

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Comment: C: error message unknow argument : " query_gencode" on local_bast_client.pl command
... Actually I'm using the cgview comparative tool, but this script doesn't work : > perl local_blast_client.pl -i test_input_protein.fasta -o blast_rs.txt -b blastn -d myDB ...
written 5 days ago by Maloki10
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error message unknow argument : " query_gencode" on local_bast_client.pl command on ubuntu
... I'am using local_blast_client.pl command to create local blast file, but when I run the command > perl local_blast_client.pl -i test_input_protein.fasta -o blast_rs.txt -b blastn -d myDB I get this error message. DESCRIPTION Nucleotide-Nucleotide BLAST 2.6.0+ Use '-help' to print detai ...
sequence written 6 days ago by Maloki10
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Mean reads length for 400 bp reads in ion Torrent
... Hi everybody, I'am using IonTorrent S5 sequencer to sequence my bacterial whole genome, but when I get the results I found the mean length of reads is only 120 bp whereas I worked with 400 bp fragments. in your opinion, what would the problem be ? ...
torrent ngs bacterial read length written 11 months ago by Maloki10
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convert bam to fasta
... Hi, I'm new in the field of NGS, I have sequenced a bacterial genome by iontorrent sequencer but I didn't put the reference genome for my sequence, So I've got an unaligned bam file Ubam. then I used the Torrent suite software to align my genome, I've got a new bam file which I want to convert it t ...
genome alignment sequencing written 11 months ago by Maloki10 • updated 11 months ago by hjafar0

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