User: taylor

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taylor0
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10 months ago
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1*********@pku.edu.cn

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Posts by taylor

<prev • 5 results • page 1 of 1 • next >
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Comment: C: How to index a large fasta file (>100GB) by using bowtie2-build
... OK. Thanks. I will try. ...
written 6 months ago by taylor0
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Comment: C: How to index a large fasta file (>100GB) by using bowtie2-build
... They are some environment microbes... I think bowtie is easy to use. Do you have some software recommended for this job? Thanks, ...
written 6 months ago by taylor0
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How to index a large fasta file (>100GB) by using bowtie2-build
... I am wondering how to index a very large fasta file (~100GB) by using bowtie2-build? I have enlarged my memory up to 512G and use the parameter "--bmax 3 --dcv 4096" to minimize the memory usage, but it still failed... So is there any possible solution to solve this problem? Thanks~ Here is the ...
genome alignment bowtie index written 6 months ago by taylor0 • updated 6 months ago by WouterDeCoster43k
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Comment: C: How to get 'nucl_est.assession2taxid .gz' from NCBI
... I will check that file later. Thanks so much. ...
written 10 months ago by taylor0
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How to get 'nucl_est.assession2taxid .gz' from NCBI
... I am wondering where to get 'nucl_est.assession2taxid.gz' file now? There is no corresponding file in NCBI FTPServer (ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/accession2taxid/ ), although the 'README' indicates it should be here... Thanks~ ...
ncbi taxonomy written 10 months ago by taylor0 • updated 10 months ago by genomax78k

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