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190
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Copy Number Alteration and Loss or Heterozygosity
LOH
CNA
copy-number
updated 3 months ago by
Ram
40k • written 3 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
601
views
Comment:
Comment: fitting a copy number profile to know CNV signatures
4 months ago by
Bogdan
★ 1.4k
2
votes
3
replies
601
views
fitting a copy number profile to know CNV signatures
CNV
copy
number
LOH
CNA
updated 4 months ago by
LauferVA
3.7k • written 5 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
211
views
allelic copy number variation
LOH
CNA
CNV
copy-number
updated 5 months ago by
Ram
40k • written 5 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
233
views
alelle - specific CNA/LOH
cancer
CNV
genomics
LOH
CNA
5 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
206
views
network alignment and network regression
network
7 months ago by
Bogdan
★ 1.4k
1
vote
0
replies
397
views
CNA/LOH caller on WGS data and chromosomal instability index
CNA
CNV
9 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
374
views
downloading the VCF files of CCLE project (or cancer genomics WGS)
cancer
genomics
WGS
CCLE
VCF
9 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
270
views
packages to detect chromoanagenesis phenomena in germline or cancer genomes
ShatterProof
9 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
7.5k
views
Answer:
Answer: How does edgeR do ERCC spike-in normalization?
9 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
185
views
clustering of genome segments
cancer
genomics
epigenetics
10 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
523
views
Comment:
Comment: wig2bed and counting the reads in the peaks
11 months ago by
Bogdan
★ 1.4k
3
votes
2
replies
523
views
wig2bed and counting the reads in the peaks
bedtools
ChIP-seq
deeptools
bedops
updated 3 months ago by
Ram
40k • written 11 months ago by
Bogdan
★ 1.4k
2
votes
1
reply
662
views
normalize and compare bigwig files
bigwig
updated 11 months ago by
Matthias Zepper
4.1k • written 11 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
480
views
calling peaks in ChIP-seq datasets from bedgraph files
ChIP-seq
MACS2
updated 12 months ago by
Marco Pannone
▴ 760 • written 12 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
1.4k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
12 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
1.4k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
12 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
1.4k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
12 months ago by
Bogdan
★ 1.4k
0
votes
2
replies
1.4k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
12 months ago by
Bogdan
★ 1.4k
0
votes
11
replies
1.4k
views
paired-end reads, idxstats, and samtools and grep
samtools
updated 12 months ago by
LauferVA
3.7k • written 12 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
1.4k
views
Comment:
Comment: paired-end reads, idxstats, and samtools and grep
12 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
1.3k
views
Comment:
Comment: converting bedgraph to bigwig by not using ucsc tools
13 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
1.3k
views
Comment:
Comment: converting bedgraph to bigwig by not using ucsc tools
13 months ago by
Bogdan
★ 1.4k
5
votes
8
replies
1.3k
views
converting bedgraph to bigwig by not using ucsc tools
bedgraph
bigwig
13 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
1.3k
views
Answer:
Answer: converting bedgraph to bigwig by not using ucsc tools
13 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
776
views
Comment:
Comment: CWL and Arvados
13 months ago by
Bogdan
★ 1.4k
3
votes
3
replies
776
views
CWL and Arvados
CWL
workflow
manager
13 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
493
views
SNV, CNA, SV
SV
CNA
SNV
updated 13 months ago by
LauferVA
3.7k • written 13 months ago by
Bogdan
★ 1.4k
2
votes
1
reply
333
views
extracting sequences from a bam file
bam
updated 13 months ago by
LChart
3.3k • written 13 months ago by
Bogdan
★ 1.4k
1
vote
3
replies
838
views
comparisons between 2 ChIP-seq datasets
ChIP-seq
updated 16 months ago by
ATpoint
76k • written 16 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
838
views
Comment:
Comment: comparisons between 2 ChIP-seq datasets
16 months ago by
Bogdan
★ 1.4k
4
votes
3
replies
1.3k
views
computing chromothripsis on cancer genomes
snp
cnv
sv
cancer
updated 16 months ago by
Thind amarinder
▴ 330 • written 5.2 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
1.1k
views
Comment:
Comment: saving png images and X11
16 months ago by
Bogdan
★ 1.4k
0
votes
2
replies
461
views
browser to visualize single cell data
scATAC-seq
updated 16 months ago by
lieven.sterck
14k • written 16 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
235
views
HIC databases
Hi-C
17 months ago by
Bogdan
★ 1.4k
2
votes
1
reply
448
views
scATAC-seq
scATAC-seq
17 months ago by
Bogdan
★ 1.4k
2
votes
0
replies
448
views
Answer:
Answer: scATAC-seq
17 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
307
views
ssvQC
ssvQC
18 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
1.1k
views
Comment:
Comment: saving png images and X11
19 months ago by
Bogdan
★ 1.4k
0
votes
5
replies
1.1k
views
saving png images and X11
scripting
saving
images
and
16 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
378
views
HOMER on AWS
HOMER
19 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
539
views
compare the background levels in two chip-seq experiments
ChIPseq
updated 19 months ago by
seidel
11k • written 19 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
460
views
Comment:
Comment: interchromosomal interactions and 4C
19 months ago by
Bogdan
★ 1.4k
0
votes
2
replies
460
views
interchromosomal interactions and 4C
4C
19 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
642
views
Comment:
Comment: compare ChIP-seq datasets in two cell lines
19 months ago by
Bogdan
★ 1.4k
0
votes
1
reply
642
views
Comment:
Comment: compare ChIP-seq datasets in two cell lines
19 months ago by
Bogdan
★ 1.4k
1
vote
4
replies
642
views
compare ChIP-seq datasets in two cell lines
ChIP-seq
19 months ago by
Bogdan
★ 1.4k
19
votes
10
replies
11k
views
7 follow
workflow management system : WDL, CWL, Ruffus, SnakeMake, etc
pipeline
language
updated 16 months ago by
dariober
14k • written 4.9 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
524
views
4C packages
4C
updated 19 months ago by
LauferVA
3.7k • written 19 months ago by
Bogdan
★ 1.4k
5
votes
4
replies
1.6k
views
6 follow
bioinformatics pipelines on GCP or AWS
RNA-seq
google
ChIP-seq
cloud
updated 17 months ago by
LauferVA
3.7k • written 2.0 years ago by
Bogdan
★ 1.4k
383 results • Page
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